Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121173g00002 ATGAAGCCTCTCTGCAGATTCTTAATAGTAGTAGTTATGGCACTGTTTTCTGTGGTGGAATCTACATCATCTATATCTTCATGCAGCACCGCCAGCAGTAGTAGCAGCGTAGAGCAGAGACTGGTAGCAAAGGCTTTCAAGTCTGTATCTGGCTTCAACGCTTCCTCTTCCTGGTTCCAAAAAGGAGTATTACTTTCCAACTGTTCATCTCCATCTCATGTCATCAGCATCAAACTTCCATCCAAGAATCTCACCGGTACCATCTCCTGGGGCTATCTCATCAACATCTCAAACCTGCAGTTTCTTGATCTCTCAGGCAATTTCTTACAAGGCAACCTCCCAACCTGGCTTTGCTCATCCTTACGTCACATCAACCTCTCCAACAACAGCTTCGGAGGTAGCATCGTCTTCACTTCCATTTGTTCCTCCATTGAAACACTCAACCTCTCCCACAACAGGTTCACCAACTGGGTGGTCCACCACCACAACTCTAGTTTCTTCCCAAACCTTAAAATCCTTGACCTCTCTCACAACCACTTGAGCACACGCCTCCCTTCAAGCTTGGCCAACCTCAACCACCTTCAATACCTTGACTTATCAAACAACAACCTCACCGGAACTTTCCCTTCCGATTTTCCTCCGCTCAATAACCTCCACTTCCTCAACATCTCCTTCAACCGCTTCAACTCAACCCTTAGCCTCAACAAGTTCAACAAATTTGGAAAAGCCGCCTTCATCCACGCTGGCAACAATTTCACCTACACCTCAACTACTCCAACTCACAACAACCACCATTCCGCAAAAGGCACCACAACCTCACAAGCCATTCACACAAGACACAAACACAAGCACAAGACATGGATTATTATCGCGGTTTCGTGTGCTTCTTCGTTAGCAGTTATTGTGATCATATGGGTGCTGCTACGCATTATTGTTGGGAAGAAGAAGAAGAAGGAGGAGCGTTGCAAGATGAACAAATGGGCAATATCGAAAGCGGAGGACGTGATGAACGGCATGGCGGTGGAGAAATCAGGGCCGTTCGCGTTCGAGACGGAGTCAGGGTGGACGTGGGTGGCTGATCTGAAGGAACCAAGTTCTGCTCCCGTAGTGATGTTCGAGAAGCCGTTGATGAAGCTCACGTTCAGAGACCTGATGGGTGCCACGTCACACTTCGGGAAAGAGTCACTCCTGGCGGAGGGTAGGTGTGGGCCCCTCTACAGGGCTGTACTCCCCGGTGATCTTCACGTGGTAATCAAGGTACTGGAACACGCCAGGGACGTTGATCCTGACGACTCCGTTGAAATGTTGGTTGACCTCTCGAAGCTGAAGCACCCAAACTTGCTGCCCCTCTCTGGTTACTGCATTGCAGGTAAGGAGAAGCTGGTACTGTACGAGTTTATGCCAAACGGCGATTTGGGGAGGTGGCTACACGAGCTTCCAACGGGGGACACCAACGTGGAGGACTGGACACGCGACACGTGGGAAATCCAAAACGGCGTCGTTGAGGAGGGATCGTCAGAGATAATGGGGTGGCTAACACGTCACCGTATTGCGGTTGGGATAGCACGTGGACTGGCTTACCTTCACCACGCGGGTTCCAAACCCCTCGTGCACGGCCACCTTGTCACCTCCAACATTTTACTCGCTGAGGATTTCGAGCCACGAATATCGGATTTCGGCCTCCGGGGAGACCCGGACCCGAATTGCGGGACCCAGGGTGACGTGTACTGCTTCGGGATGGTGCTGATGGAGATGCTGACGGGGAAGGGAGGGACGGAGGAAACGGTGGGCGCGGTGAGGAAGGCGGTGAGGGAAGGGGAGGGGGTTAGGGTTCTGGACGAGAGGCTGCGAGTGGGCAGTGAGTGGTTGAGGGAAATGGTGGAGAGTCTCCGAGTGGCGTACCTTTGCACTGCTGAGTCGCCTTCTAAGAGGCCCACTATGAAGCAGGTTTTGGGCTTGCTCAAAGATATTACTCCAAACTAA 1983 0.5159 MKPLCRFLIVVVMALFSVVESTSSISSCSTASSSSSVEQRLVAKAFKSVSGFNASSSWFQKGVLLSNCSSPSHVISIKLPSKNLTGTISWGYLINISNLQFLDLSGNFLQGNLPTWLCSSLRHINLSNNSFGGSIVFTSICSSIETLNLSHNRFTNWVVHHHNSSFFPNLKILDLSHNHLSTRLPSSLANLNHLQYLDLSNNNLTGTFPSDFPPLNNLHFLNISFNRFNSTLSLNKFNKFGKAAFIHAGNNFTYTSTTPTHNNHHSAKGTTTSQAIHTRHKHKHKTWIIIAVSCASSLAVIVIIWVLLRIIVGKKKKKEERCKMNKWAISKAEDVMNGMAVEKSGPFAFETESGWTWVADLKEPSSAPVVMFEKPLMKLTFRDLMGATSHFGKESLLAEGRCGPLYRAVLPGDLHVVIKVLEHARDVDPDDSVEMLVDLSKLKHPNLLPLSGYCIAGKEKLVLYEFMPNGDLGRWLHELPTGDTNVEDWTRDTWEIQNGVVEEGSSEIMGWLTRHRIAVGIARGLAYLHHAGSKPLVHGHLVTSNILLAEDFEPRISDFGLRGDPDPNCGTQGDVYCFGMVLMEMLTGKGGTEETVGAVRKAVREGEGVRVLDERLRVGSEWLREMVESLRVAYLCTAESPSKRPTMKQVLGLLKDITPN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121173g00002 660 ProSiteProfiles Protein kinase domain profile. 391 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121173g00002 660 Pfam Leucine Rich Repeat 120 133 IPR001611 GO:0005515
Stsc121173g00002 660 Pfam Leucine Rich Repeat 98 117 IPR001611 GO:0005515
Stsc121173g00002 660 Gene3D Transferase(Phosphotransferase) domain 1 467 565 - -
Stsc121173g00002 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 57 657 - -
Stsc121173g00002 660 Gene3D Ribonuclease Inhibitor 15 284 IPR032675 -
Stsc121173g00002 660 SUPERFAMILY L domain-like 63 251 - -
Stsc121173g00002 660 PRINTS Leucine-rich repeat signature 191 204 - -
Stsc121173g00002 660 PRINTS Leucine-rich repeat signature 170 183 - -
Stsc121173g00002 660 Pfam Leucine rich repeat 168 228 IPR001611 GO:0005515
Stsc121173g00002 660 Gene3D Phosphorylase Kinase; domain 1 352 466 - -
Stsc121173g00002 660 Pfam Protein tyrosine and serine/threonine kinase 395 562 IPR001245 GO:0004672|GO:0006468
Stsc121173g00002 660 FunFam Putative LRR receptor-like serine/threonine-protein kinase 352 466 - -
Stsc121173g00002 660 SUPERFAMILY Protein kinase-like (PK-like) 368 655 IPR011009 -
Stsc121173g00002 660 ProSiteProfiles Leucine-rich repeat profile. 169 192 IPR001611 GO:0005515
Stsc121173g00002 660 Gene3D Transferase(Phosphotransferase) domain 1 566 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121173g00002 Stsc-Chr121173 10367 12956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121173g00002 74 657 Receptor kinase-like Gene Family AT5G07280 30.171 3.54e-71 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Stsc121173g00002 PK_Tyr_Ser-Thr 5.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121173g00002 - - gmx:100788556 783.482