Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121172g00006 ATGAAGGATAGAGCGCTTCACTCTCAGTCTCTGGTGGCAGTGGCACCCTCGTCTCTAACCTTCTCGCTCTGTTCACTCTCTTCTCCTCTCGCCACCGTTGCCGACGGCGGTTTCTCGCACCTGCGGGTTTACGACGCGGTCCACATACAATTCTCTACAAGCCACCACTCTCTGTCCACCGGTGGCGACGGCGCACACCACGCATTCGATGGTACTCGATCCTTTGAGAGTATGAAAGTAATGAGCTTTTCTGGAGGCATAACAGCACCGAGTTCTTTGTTTGCTCCGACGGAAATGCCTATTTTAGCATTTGGTCATTCTAAGTTGAGTGCTGCATTGGCCCTTCGGTTGCCATGTAACTGCATGAGGCGGATGGGTTTGGTTACGAAGCTTCAGTATTCTGTTGCTAATAGGGCATCATCGGCTTCTAGACATGTGGATTCGCCAGCTTCCAACCCTGAGTCACGTCCAGTGAGTAGGAGGCGGGGAGGAGGCTCATCGTTATATATTCGTCCTAGTTTATCGGTCATGAATAAGGATAGGGAGGAGATGCGCGAAATGGTTTATGAGTTCTTGCGGGGAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACAGTTGATGTTATGAGAGAACGCATAGATTTTCTTCACAATTTGGGGCTTACAATTGAAGATATTAACAATTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAATATGATTCCGGTGCTTGATTACCTCGGTAAATTGGGAGTTAGGAAATCCACATTCACTCAGTTTTTGAGGAGATACCCACAAGTGCTTCACGCTAGCGTGGTTGTGGATCTTATGCCGGTGGTTAAGTATCTTCAAGGGATGGATATAAAGCCCAACGATATTCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTAGGATTCAAACTCGAGGGAACCATGAGCACATCGGTTGCTTATTTGGTTGGGATTGGTGTATCGAGAAGAGAAGTTGGAGGGGTTTTAACTAGATATCCTGAGATTTTGGGGATGCGAGTTGGTAGAGTCATCAAACCTTTTGTGGAATTTCTGGAAAGCTTGGGGATTCCAAGGTTAGCCCTTGCTAGATTGATAGAGCAAAAACCTTATATTCTTGGATTTGGACTGGACGAGAAAGTGAAGCCGAATGTGAAGTCCCTTGAAGAGTTTAATGTCAGGCGAACATCTCTTTCCTGCATAATTGCTCAATATCCCGACATCGTTGGAATTGACTTAAAGCCAAAGCTTGTGAATCAGAGTAATTTACTCAACTCTGTACTGAACGTGGATCCTGATGATTTCGGAAGAGTTGTTGAGAAGATGCCGCAAATAGTTAGCCTCACCAAAGGACCTATGCTTAAACATGTTGATTTTCTTAAGGATTGTGGATTTTCCTTAGAGCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTGGCTTTGAACATTGACATCATGAAACTTAGCTTTGATTACTTCCAAGCAGAGATGAAAAGGCCCTTGGAAGACTTGGTTATTTTCCCAGCATTCTTCACATATGGTCTCGAGTCAACCGTAAAACCAAGGCATAAGGTGATTGCTAAGAAAGGATTAAAGTGTTCTCTTTCGTGGATGCTTAATTGCTCCGATGAGAAGTTTGAGCAACGAATGGAATATGACACTATTGACATGGAGGAGATGGAAATGGAGCCATCGTTTGATATGGATTCGCTCATGCAACCAAGGAATGATGAATCGGGTTCTGACTATGAAGATTATGATGATAGCGATGATGATTAG 1812 0.447 MKDRALHSQSLVAVAPSSLTFSLCSLSSPLATVADGGFSHLRVYDAVHIQFSTSHHSLSTGGDGAHHAFDGTRSFESMKVMSFSGGITAPSSLFAPTEMPILAFGHSKLSAALALRLPCNCMRRMGLVTKLQYSVANRASSASRHVDSPASNPESRPVSRRRGGGSSLYIRPSLSVMNKDREEMREMVYEFLRGIGIVPDELDGLELPVTVDVMRERIDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLRRYPQVLHASVVVDLMPVVKYLQGMDIKPNDIPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVSRREVGGVLTRYPEILGMRVGRVIKPFVEFLESLGIPRLALARLIEQKPYILGFGLDEKVKPNVKSLEEFNVRRTSLSCIIAQYPDIVGIDLKPKLVNQSNLLNSVLNVDPDDFGRVVEKMPQIVSLTKGPMLKHVDFLKDCGFSLEQMRKMIVGCPQLLALNIDIMKLSFDYFQAEMKRPLEDLVIFPAFFTYGLESTVKPRHKVIAKKGLKCSLSWMLNCSDEKFEQRMEYDTIDMEEMEMEPSFDMDSLMQPRNDESGSDYEDYDDSDDD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121172g00006 603 FunFam Transcription termination factor mterf4, chloroplastic 214 351 - -
Stsc121172g00006 603 FunFam Transcription termination factor MTERF4, chloroplastic 352 566 - -
Stsc121172g00006 603 Pfam mTERF 250 558 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 MobiDBLite consensus disorder prediction 574 603 - -
Stsc121172g00006 603 SMART mt_12 480 511 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 512 543 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 372 403 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 336 367 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 Gene3D Transcription termination factor 3, mitochondrial 214 352 IPR038538 -
Stsc121172g00006 603 Gene3D Transcription termination factor 3, mitochondrial 353 567 IPR038538 -
Stsc121172g00006 603 PANTHER CGI-12 PROTEIN-RELATED 249 560 IPR003690 GO:0003690|GO:0006355
Stsc121172g00006 603 MobiDBLite consensus disorder prediction 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121172g00006 Stsc-Chr121172 23602 26073 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc121172g00006 mTERF 1.1e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121172g00006 K15031 - gmx:100785223 798.89