Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121171g00005 ATGACTCGCCAGGGAGCTCAAGAAGAAAGCGATAACATGCTCATCGATGAACCACAACTGCCTCAGCGAGGCCAAATCGCTGCCCTTCCTGATGAGTTCAACCCCAGTTATCTCAAATTATATTACAGTAAGCTGTTTCCTCATGCTGATTTGTATAGATGGATGTCTTACGGTAACGATGGGAAGCATCCCGGTTGTGATTCATCTTACTTGGTGCGAAGGGAATTCTCTTATACGTTGGATAATGATATATTTGTGCGCTACAATACCTTCAATAGCGCCGCCGAACTTGAAAACTCCATCAAAGAAAAGTGCCCTTTGAAGATAGATATTGGACCCATCTACAACCTCAATCCTGCAAATAGGAATGCCTATGCTGGAGATAATGTTCTCACTCCGGTTGAGAGGGAGCTGATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGCTGCTCAGGTGCTGATGTTTGTCTCGATTGCTGGCCATTAATGACCGTAGCTATCAAAGTAATCGATACTTCCTTAAGAGATGACTTTGGGTTTAGACATATTCTCTGGGTATATAGTGGTCGACGTGGTGTACATTGTTGGGTCTGTGATAGAAAGGCAAGAAGGTTGACTAATGAGCAGAGAGCAGCAGTTGCGGACTATTTTCGTGTCTACAAGGGAAATGAAAATAGCAATAAGAAGGTTACTTTGATGGGTCAAGTTCTGCATCCCTTTCTTGCGAGATCATATACTGAAGTTCTGAAGGAATATTTTGAGACAAAACTTCTTACAAGTCAAAATATACTTTCTAGTGAGGAGAGATATGAGAAGATCCTAGACATGATTCCTGATCAATCTATTGCTTCTGAACTTCGAGCGAAGTGGCAAGACGGTAGGCGGTCATCCAGTGCAAAAGAAGACATTAATATTGTTCGATGGGAACAGCTTAAACAGTTGGTGCAAAGGCATAAGGT 971 0.4171 MTRQGAQEESDNMLIDEPQLPQRGQIAALPDEFNPSYLKLYYSKLFPHADLYRWMSYGNDGKHPGCDSSYLVRREFSYTLDNDIFVRYNTFNSAAELENSIKEKCPLKIDIGPIYNLNPANRNAYAGDNVLTPVERELIFDIDMTDYDDVRYCCSGADVCLDCWPLMTVAIKVIDTSLRDDFGFRHILWVYSGRRGVHCWVCDRKARRLTNEQRAAVADYFRVYKGNENSNKKVTLMGQVLHPFLARSYTEVLKEYFETKLLTSQNILSSEERYEKILDMIPDQSIASELRAKWQDGRRSSSAKEDINIVRWEQLKQLVQRHKV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121171g00005 324 SUPERFAMILY Prim-pol domain 33 282 - -
Stsc121171g00005 324 Gene3D DNA primase, PRIM domain 24 324 - -
Stsc121171g00005 324 Pfam DNA primase small subunit 140 306 IPR002755 GO:0003896|GO:0006269
Stsc121171g00005 324 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 39 319 IPR014052 GO:0003896|GO:0006269
Stsc121171g00005 324 CDD AE_Prim_S 47 249 IPR014052 GO:0003896|GO:0006269
Stsc121171g00005 324 PANTHER DNA PRIMASE SMALL SUBUNIT 29 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121171g00005 Stsc-Chr121171 49492 51947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121171g00005 1 320 Core DNA Replication Machinery Family AT5G41880 60.870 5.18e-154 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121171g00005 K02684 - dcr:108206974 517.694