Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121171g00001 ATGGTTGAGAAAATTGAGAGTTGGAGTCTAATTTCGTTCATGGAACTGAGGAATGCATGTGCTTGCTTCTTTCTGTTTTGTAGCTTCTGCTTTGTCACTTTCTGTGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAAAAGGTTTCAATGATTCAAATAACATTTCATGGGTTCCGGACACAAATTACATAACCACAGGCAAGACTACAACCATTACTTACACTGATCATGGTTCAATCTCAAAGAATGTCTCGGCGCGATTCTTCTCGAATTCCAGACGGCGAAAATGTTACAGAATACCAATGAACAATAATGCAACTAATTTGGTTCTTGTTAGAGCAAATTTCATGTACAAGAATTATGATGGACTTGCGGTGCCTCCTAGATTCTCTGTTTCTGTTGGGACATCAATTGCTGCCACTGTTGATCTTTCTGAACATGATCCATGGACAGAGGAGTTCCTATGGACAGTTAATAAGGACACCTTGCCATTCTGCTTGATTTCAGTTCCGGATGGCGGCTCGCCGGTAATTTCTTCTCTTGAAATCCGGCCGCTTCCGCGAGCTGCATACACGAATGCTATGGCTGACTTTCCAAATAAGTTACTAAGGAAGAGCTACCGGATTGATTGCGGCTACACCGGGGATTCTATCCGGTACCCTTTGGATCCATTTGATAGAATATGGGATTCTGATATAAGATTCACACCCTTTCATGCTACAACTGCATTCACTATTCAACTCGGATTCAATCCAACTAATCTCAAGGAGCAACCACCAATAACTGTTCTTCAAACGGGTCGAATTTTGGCACGAAAGAATATTCTAACATATAACCTCCCTCTTGATGATGATGATGAATTTGGAGACTACTACATCATCCTTTACTTTGCTGGAATTCTTCCTGTGTTGCCATCATTTGATTTACTTATAAATGGAGATCTTGTGCAACCAAACTACACAATCATGAGATCAGAGATCAGTTCTTTGTATTTTACTGGAAAGAGGATCAGAAGAAGCTTGAGTATTACACTAAAGAACATCAGCTTTTACCCTCTCATCAATGCATTTGAAGTGTACAAGATTGTTGATATTCCTTCTGAAGCTTCTTCAACCACAGTTTCAGCAATGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAAGATGATCCATGCTCTCCATCTCCATGGGAAAAAATTGATTGTCAAGGAAACCTTGTTACTTCATTGGATCTTTCAAACATAAATTTGAGATCAATTGGTCCTACATTTGGTGACTTGCTAGACCTTAAAACATTGGATTTGCACAACTCATCTCTTTCTGGTGAAATACAAAATTTGGGTAGCTTGCAACATCTTCAGATACTGAACTTGAGTTTCAATCATCTAACATCCTTTGGTGCAGAGCTGGAGAACTTGATTAGCCTTAGAGTATTAGATTTGCAGAACAATAGTCTAAAAGGAACAGTTCCAGAAAGCTTGGGAGAGTTAGAGGATCTCCACTTATTGAATTTGGAAAATAATAGACTAGAAGGTCCACTGCCACAGACATTGAACAAGGCAACTTTAGAGATCAGAGCATCAGGGAACTTGTGCCTAACATTTTCCACAACTATATGTGATGATGCCACATCCAACCCTACAAATGAGACACCTCAAGTTACTACAGTTCCTGAAAATCAGCACAATCTCCATAAACATCATCTTGCAATCATATTAGGAGCAGTTGTTGGAGGAGTTACAGTAGCCCTTCTGTTACTAACCATTTCAGTTTTCTTATATAAGACTATGAAGCAACATGAAGTAGTCTCACACACATCAAGGTCTGATATGGACATGAGGAACTGGGGTGCAGCAAGAGTGTTTTCCTACAAAGAAATTAAATTAGCTACAAGAAATTTCAAAGAAATTATAGGAAGGGGGAGTTTTGGACCTGTTTACCTTGGAAAGCTTCCAGATGGTAAATCAGTAGCTGTCAAAGTTCGCTCTGACAAATCCCAACTTGGTGCAGATTCTTTTGTCAATGAGGTTAATATTTTGTCAAGCATAAGGCATCAGAATCTTGTGTCTTTGGAAGGGTTTTGTCATGAATCAAAGCATCAGATATTAGTTTATGAGTACTTGCCTGGTGGATCCCTTGTTGATCACCTATATGGTACAAAGAGTAAAAAAACTTCTCTAAGCTGGGTTAGGAGATTGAAAATTGCCGTTGATGCAGCAAAAGGATTGGATTATTTGCACAACGGAAGCGAACCGCGAATCATTCACCGTGACATAAAATGCAGCAACATTCTGTTGGACATGGAGATGAATGCCAAGGTCTGTGACTTAGGCCTTTCTAAGCAAGTAATCCAAGCTGATGCAACTCATGTCACCACTCTTGTTAAAGGAACTGCTGGTTATCTTGATCCAGAGTATTATTCCACTCAACAATTGACAGAGAAAAGTGACGTATATAGTTTTGGAGTGGTTCTTTTAGAACTTATTTGTGGAAGAGAGCCATTGAGTCACTCTGGGACACCTGACTCATTCAATTTGGTCTTATGGGCGAAGCCTTACTTACAGGCAGGTGCATATGAGATTGTGGATGAAGACATAAGAGGAAGTTTTGATCCTTTAAGCATGAAGAAAGCATCTTTAATTGCTGTGAGGTCAGTAGAGAGGGATGCTTCACAGAGGCCATGCATTGGACAAGTATTAGCAGAATTGAAGGAGGCTTATACTATTCAACTCAGATTCCTTGAAGAATCTTGTCAAAACAACAATTGA 2784 0.3976 MVEKIESWSLISFMELRNACACFFLFCSFCFVTFCEQDGFLSLSCGGRKGFNDSNNISWVPDTNYITTGKTTTITYTDHGSISKNVSARFFSNSRRRKCYRIPMNNNATNLVLVRANFMYKNYDGLAVPPRFSVSVGTSIAATVDLSEHDPWTEEFLWTVNKDTLPFCLISVPDGGSPVISSLEIRPLPRAAYTNAMADFPNKLLRKSYRIDCGYTGDSIRYPLDPFDRIWDSDIRFTPFHATTAFTIQLGFNPTNLKEQPPITVLQTGRILARKNILTYNLPLDDDDEFGDYYIILYFAGILPVLPSFDLLINGDLVQPNYTIMRSEISSLYFTGKRIRRSLSITLKNISFYPLINAFEVYKIVDIPSEASSTTVSAMQVIQQSTGLDLGWQDDPCSPSPWEKIDCQGNLVTSLDLSNINLRSIGPTFGDLLDLKTLDLHNSSLSGEIQNLGSLQHLQILNLSFNHLTSFGAELENLISLRVLDLQNNSLKGTVPESLGELEDLHLLNLENNRLEGPLPQTLNKATLEIRASGNLCLTFSTTICDDATSNPTNETPQVTTVPENQHNLHKHHLAIILGAVVGGVTVALLLLTISVFLYKTMKQHEVVSHTSRSDMDMRNWGAARVFSYKEIKLATRNFKEIIGRGSFGPVYLGKLPDGKSVAVKVRSDKSQLGADSFVNEVNILSSIRHQNLVSLEGFCHESKHQILVYEYLPGGSLVDHLYGTKSKKTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDIKCSNILLDMEMNAKVCDLGLSKQVIQADATHVTTLVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQAGAYEIVDEDIRGSFDPLSMKKASLIAVRSVERDASQRPCIGQVLAELKEAYTIQLRFLEESCQNNN 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121171g00001 927 Gene3D - 207 367 - -
Stsc121171g00001 927 SUPERFAMILY L domain-like 378 527 - -
Stsc121171g00001 927 SMART serkin_6 637 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121171g00001 927 Pfam Malectin-like domain 43 364 IPR024788 -
Stsc121171g00001 927 CDD STKc_IRAK 643 910 - -
Stsc121171g00001 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Stsc121171g00001 927 SMART LRR_typ_2 455 477 IPR003591 -
Stsc121171g00001 927 SMART LRR_typ_2 478 502 IPR003591 -
Stsc121171g00001 927 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 713 920 - -
Stsc121171g00001 927 Gene3D Phosphorylase Kinase; domain 1 609 712 - -
Stsc121171g00001 927 PANTHER OS07G0107800 PROTEIN-RELATED 473 912 - -
Stsc121171g00001 927 Gene3D Transferase(Phosphotransferase) domain 1 713 923 - -
Stsc121171g00001 927 SUPERFAMILY Protein kinase-like (PK-like) 616 908 IPR011009 -
Stsc121171g00001 927 Gene3D Ribonuclease Inhibitor 374 547 IPR032675 -
Stsc121171g00001 927 ProSiteProfiles Protein kinase domain profile. 637 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121171g00001 927 Pfam Protein tyrosine and serine/threonine kinase 639 899 IPR001245 GO:0004672|GO:0006468
Stsc121171g00001 927 FunFam Leucine-rich repeat receptor protein kinase EMS1 425 522 - -
Stsc121171g00001 927 FunFam serine/threonine-protein kinase PBS1-like 604 712 - -
Stsc121171g00001 927 Pfam Leucine rich repeat 457 515 IPR001611 GO:0005515
Stsc121171g00001 927 ProSiteProfiles Leucine-rich repeat profile. 457 479 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121171g00001 Stsc-Chr121171 5740 13640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121171g00001 23 926 Receptor kinase-like Gene Family AT5G48740 61.283 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc121171g00001 Malectin_like 2.5e-54 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121171g00001 - - aprc:113850446 1408.28