Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121170g00001 ATGGCTCCAGAGATTGGGCTTCTCTCAATGACCCAGATCCAAAAATTCTCACAATCCCAACAACACAAAAACAACAACCACCACCACCACCCTCCTTCTCCTCCTTCTCCTTCTCCTTCTTCTTCCCCACTTGAACAGAAACAAAACCCTAACCCATCATCCATAACCACTTGGATGTGGAACCCTAGGGAACAGCACCAAGAAGATGACGACTCATGGGAGGTCAGAGCCTTTGCAGAGGACACTGGCAACATCATGGGCACCACATGGCCACCGAGGTCCTACACCTGCACCTTCTGCAGGAGGGAATTCCGCTCCGCTCAAGCCCTCGGTGGCCACATGAATGTCCACCGCCGCGACCGCGCTCGCCTCCACCACCAGCCTCCTCTTCCTCTTCCTCCTCCCCCTCCTCCGCCACCTCCGCCTTTCACTCCTCCTCCAGCTCCACCTCACCATCATCATCATCAATATCCATCTCCAGCTGCATTCATAAATGTCCCTCATCGTCATCACAATCAGGATCTGGTTGCAAATGCTGCAGGGTTGTGCCTCTTCTACCACTTGCCACCAAGCCCTAATAGTGCCACTACTTTGGCAGCTCCTTCTCCTTCTCCGTCTCCGTCTCCGTCCACTCTTCTCTCCATAACGTCATCTTCATCGTCATCTTATTACCCACAAAACAACTTGATGACGATGATGCAACCTTCTTGCTCTCCCTCCTTTGATTTCCCGTCCGGGATCAATGGCTCTTCTTCTTCTTCATCTACTTACTCTACCAAAGTGATGGAAGAAGCCCTCGTAAACAATAATAATAGTAACGGCCATCACCACCATCACTTTGAAGAGCTTGATCTAGAGCTGCGCTTGGGGCAAAAGCGACCACCAACTCGACCAAGCTAG 900 0.5156 MAPEIGLLSMTQIQKFSQSQQHKNNNHHHHPPSPPSPSPSSSPLEQKQNPNPSSITTWMWNPREQHQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHQPPLPLPPPPPPPPPPFTPPPAPPHHHHHQYPSPAAFINVPHRHHNQDLVANAAGLCLFYHLPPSPNSATTLAAPSPSPSPSPSTLLSITSSSSSSYYPQNNLMTMMQPSCSPSFDFPSGINGSSSSSSTYSTKVMEEALVNNNNSNGHHHHHFEELDLELRLGQKRPPTRPS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121170g00001 299 PANTHER OS07G0101800 PROTEIN 67 292 - -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 127 154 - -
Stsc121170g00001 299 PRINTS Proline rich extensin signature 129 150 - -
Stsc121170g00001 299 PRINTS Proline rich extensin signature 33 45 - -
Stsc121170g00001 299 PRINTS Proline rich extensin signature 188 205 - -
Stsc121170g00001 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 195 219 - -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 42 58 - -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 274 291 - -
Stsc121170g00001 299 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 1 58 - -
Stsc121170g00001 299 Pfam C2H2-type zinc finger 95 119 - -
Stsc121170g00001 299 SMART c2h2final6 95 117 IPR013087 -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 125 159 - -
Stsc121170g00001 299 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Stsc121170g00001 299 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121170g00001 Stsc-Chr121170 18181 19080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121170g00001 58 188 C2H2 Transcription Factor Family AT4G17810 50.370 1.60e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121170g00001 - - adu:107487554 317.775