Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121163g00004 ATGCAGCACCAAGAAGCCATGAAAATTGTGCAAGTGTTCAAGGCATCACCCTCTTCATTGGGATCACAAAACTTGTTACCTTCTTCTTCCACATCTCTTCCTCTAACCTTCTTTGACATACTATGGCTAAGGTTACCACCTGTTCAACGTGTTTTCTTCTATGAATTCCCACACCAACCCTCATTCTTCTATGATGCCATTCTTCCTAAACTCAAACACTCTCTTTCTGTTGCACTTTCTTACTATTTCCCTCTTGCTGGAACCCTCACTTGGCCTCATCATTCCAACAAACCCATCATCTCTTACAACGTTGGTGACACTCTCTCACTTACTGTAGCTGAATCTGATGCTGATTTCAACCATATTTCAGGTTCTGACTTTTGTGAAGCCTCAAAGCTTCACCATCTTGTTCCTGAATTGATCATTTCCGATGATGAAGCCACTGTCTTGGGCTTACAAGTTACCCTTTTTCCGAACTATGGATTCTCCATTGGAGTCACATCACACCATGCTGTTCTTGATGGGAAAACCTCAACGTCCTTCATCAAATCTTGGGTTTATCTCTGCAACAAGCTAGGAGATTCATCATCACCTTGTGATTTGCCTCCTGAATTGAGTCCTTTCTTTGACAGAGAAATTGTGAAAGATCCCAAAGGACTTGAAGCAAAGTATCTGAGTGATTGGTTAAAGCAAGGTGGACCCAACAACAGAAGCCTCAAGGTTTGGAATCTTCCGGTTCCAGAAGATTCAGTAAGGGGTTTGTTCAAACTGTCTAAATCAAACATTGAAAACCTCAGAAAATTAGTGATGTCCAAGAAGAAAGAAACTATGAATCTTCACCTTTCAAGTTTTGTGATATCTCTTGCATATGCTATTGTTTGTAAAGTTAAAGCTGAGAAAGTTAACAGCAACAGAGTGTTTGTGGCTGTAAATGTTGATTGCAGAGCAAGATTGGATCCTCCTCTTCCTCCACCTTATTTTGGAAACTGTGGTGGTGCCAGAGTAGCGGTTTCTGAAACAAAAGGATTGTTGGGTGAAGATGGAATAGCTGTTGCTGTGGAATCACTAAGTAGTGCATTGGAAACTTTGAAGGATGGTGTGCTGAGTGGTGCAGAGAATTGGTCATCATTTTTGCATGATGGTTTGCATAGTGATGATAAGTTTATGAGTGTTGCTGGGACACCAAGGTTTGAGGTTTATGGTAATGATTTTGGGTGGGGAAGGCCAAAGAAGGTGGAGATGGTGTCTATTGATAGAACTGGTGCATTTTGTTTCTCAGATAGCAGCAATGGTGATGGTGTTGAGATTGGTTTGGTCTCCAACAAAAAATCCATGGATGCTTTTGCTTCTCTCTTTCTCCAAGGACTTGCATTTTAG 1377 0.4125 MQHQEAMKIVQVFKASPSSLGSQNLLPSSSTSLPLTFFDILWLRLPPVQRVFFYEFPHQPSFFYDAILPKLKHSLSVALSYYFPLAGTLTWPHHSNKPIISYNVGDTLSLTVAESDADFNHISGSDFCEASKLHHLVPELIISDDEATVLGLQVTLFPNYGFSIGVTSHHAVLDGKTSTSFIKSWVYLCNKLGDSSSPCDLPPELSPFFDREIVKDPKGLEAKYLSDWLKQGGPNNRSLKVWNLPVPEDSVRGLFKLSKSNIENLRKLVMSKKKETMNLHLSSFVISLAYAIVCKVKAEKVNSNRVFVAVNVDCRARLDPPLPPPYFGNCGGARVAVSETKGLLGEDGIAVAVESLSSALETLKDGVLSGAENWSSFLHDGLHSDDKFMSVAGTPRFEVYGNDFGWGRPKKVEMVSIDRTGAFCFSDSSNGDGVEIGLVSNKKSMDAFASLFLQGLAF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121163g00004 458 Gene3D - 246 458 IPR023213 -
Stsc121163g00004 458 Pfam Transferase family 27 450 - -
Stsc121163g00004 458 Gene3D - 2 235 IPR023213 -
Stsc121163g00004 458 PANTHER - 8 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121163g00004 Stsc-Chr121163 46538 48152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121163g00004 51 454 Monolignol Biosynthesis Gene Families AT5G48930 25.943 3.18e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121163g00004 - - ahf:112744586 809.29