Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121163g00003 ATGGCTTCTTCTAACAACCACACCTCCATCAAAATCCTTGACAAATGCAGAGTTTCTCCACCACCAGAACACTCAACCGACGTTGTTTCTCTTCCTCTTACTTACTTTGACTTGTTCTGGGTTCGGTTCCACCCCGTTGAGCGTGTCTTCTTCTACAAACTTCACTGTCCTCCATCTTTGTTCTTCGAACAAGTGCTTCCCAAGCTCAAAACCTCGCTCTCTCTTACCCTCCAACACTTCCTCCCTCTCGCTGGAAACTTGGTTTGGCCTTCTGATTCAGATAAGCCATTCGTTCAGTACAATCCTGGTGATGGAGTTTCACTTCTCATAGCAGAATCCGATGCAGATTTCAACCATCTTTTGGGGTATAACTCACCCCGTGAAGCTTCTGAAACTCGATGCTTCGTACCAGAATTGGAAACACTGGAATATCATGCTGCTGCTATGTCTCTTCAGATCACTCTCTTCCCCAACAGTGGATTCAGCATCGGAATCAGCACCCACCATGCTGTTCTCGATGGGAAATCTTCCACCATGTTCATCAAAGCATGGGCTTCGACATGTCAAAGCCTTGAAGAAGGAGCACAAGAAGAATCAACGAGTTTGGTTCATGAGTTGGAGCCTTTCTTTGATAGACAAGTCATCAAAGATCCAAAGAATCTTGGACTCATGTTCTTGAACAATTGGTCAGAAGCCATGTCTCATATGTTCCCTAATGATGAGAGCACCAAAATCAAGAAAAGCTTGAAGATTCTACCGTTCGAACCCAAGTTGAAGGACTCTGTTCGTGCAACGTTCAAGCTCACACGTTCAGATTTGGAGAAGGTGAAGAAAAAGGTGTTGTCCAATTGGAACAACAACAACGTTAATGGTTTGAATGATGGTGATGAAGAATCTACAAACACACCACCTAGCACTCTTTCTACTTTTGTTCTAACCTGCAGCTATGTCACGGTTTGCATCGCTAAGGCGATTAATGGAGTTTATAAGGAGAGACAAAAATTCGGGTTCGCATTCACCGTGGATTGTAGGAAGAGGTTAAATCCTCCAATACCTGAAAATTATTGTGGTAACTGCGTGTGGGGCCATTTTGTTGATGCAAAAGCAGAGGACTATGTTAAGGAAAATGGAGTGGTCCTTGTTGCTAAGGGAATTTACAAGGAGACAAAAAAGTTGGGTAGTGAAGACATTCTTGATGGAGTAGAAGAATCAGGGTTTGATAAGTACATGGATATGGCTAAAGAAGGAATTGAAATCCTTGGTATTGCTGGTTCTAATAGGTTTGGTGTTTATGGTATTGATTTTGGTTGGGGAAAGCCTGAGAAAGTTGAGATAGCTTCTATTGATAGAGGTGTAACAATGGGTTTGGCTGAGAATAGTGATGGTAATGAAGGTGGGGTCGAGGTTGGTCTTGTTCTTAATAAGCAGGTTATGGATCTCTTTAGGACTTTGTTTCGTCAAGGACTTGAACATGTTTGA 1479 0.4273 MASSNNHTSIKILDKCRVSPPPEHSTDVVSLPLTYFDLFWVRFHPVERVFFYKLHCPPSLFFEQVLPKLKTSLSLTLQHFLPLAGNLVWPSDSDKPFVQYNPGDGVSLLIAESDADFNHLLGYNSPREASETRCFVPELETLEYHAAAMSLQITLFPNSGFSIGISTHHAVLDGKSSTMFIKAWASTCQSLEEGAQEESTSLVHELEPFFDRQVIKDPKNLGLMFLNNWSEAMSHMFPNDESTKIKKSLKILPFEPKLKDSVRATFKLTRSDLEKVKKKVLSNWNNNNVNGLNDGDEESTNTPPSTLSTFVLTCSYVTVCIAKAINGVYKERQKFGFAFTVDCRKRLNPPIPENYCGNCVWGHFVDAKAEDYVKENGVVLVAKGIYKETKKLGSEDILDGVEESGFDKYMDMAKEGIEILGIAGSNRFGVYGIDFGWGKPEKVEIASIDRGVTMGLAENSDGNEGGVEVGLVLNKQVMDLFRTLFRQGLEHV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121163g00003 492 Gene3D - 9 241 IPR023213 -
Stsc121163g00003 492 PANTHER - 10 490 - -
Stsc121163g00003 492 Gene3D - 258 492 IPR023213 -
Stsc121163g00003 492 Pfam Transferase family 12 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121163g00003 Stsc-Chr121163 34297 36126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121163g00003 10 481 Monolignol Biosynthesis Gene Families AT5G48930 25.605 2.92e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121163g00003 - - aip:107635420 770.77