Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121159g00004 ATGTTCTACGACGAGTTCCCTCCTCTCCCTGATTTCCCATGCATGTCTTCATCGTCTTCTTCGTCTTCAACTCCAGCACTTCCATTGAAGAATCTAACATGCTCAACCACCTCCGCCACAACGACCACCGCAACAACCTCTTCCTCTTCATCTTCTGCATCTTCCTGGGCTGTTCTGAAGCCAGAAGCCGAGGAGAATAACAATAATAATGATGATGCAGAGTGGAATTACTGCAATAAACAAGATATTTACATGCATCATCATGATCCACTTGAGGCTACAACTCCGGCAGGAGGAGCGTTGTCCTCAACTGCCTCCATGGAGGTTTCACAGCCACAACAGTTTCCGGATCAAGCCGGGTTCGACGGTGGTGGTGGTGGTGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTTCTAGAATCCAACGAGTTCTTCGACCCTTCGTCTATCTTCGAAGGCGAAGAGAATCCCTTCACACAAGAGGTTCAGGTTCTTCCGAATCAAGAAGAAGAACAACAGCAGCACCAGCAAGAAAAACATGCAATATTTGAAAACCAAAACGATCTTGCTTTTCTTGGGCAGCAGCAAGAAGCAGAGGAAGGTGTTAGTAATAATTATCAACAGTTTCTTGGTAACGATGCAGAGATCCAAGGAGGCGGTGGAGGTGGTGCAATGGCGGATGATGAAATGAGCATGGTATTCTTGGAGTGGCTGAAGTCGAACAAAGACAGCGTTTCCGCCAGCGATTTGAGGAATGTGAAGCTGAAGAAATCGACGATAGAGAGTGCAGCGAAGCGATTGGGTGGTGGAAAAGAAGCTATGAAGCAATTGCTGAAGCTGATTCTTGAATGGGTTCAAACCAGCCACCTTCAGAATAAGAGGCGCAAGGAAAATAATAATAATAATGACAATGATGGAGTCGCCAACACTTTCACTGAACCGTTTCAAGATCCGACTCATCAAAACCAGAACAACGCAATAAATGCTTCGGGTTCTTTTGAGACTGAACCAAACACATGTTTCATGCACCAACCATGGATGGCAGATCAAACACCTCTAATAGCGTCAGCTGCTCCTCCGCCGCCTCCCCAATCTCAGCCTCAGCCTCAGTTTCAACAACCCATGGTTGGTTATGTTGGCGACCCTTACACAAATGGTGCTGTTGCAAACACCATCCATGGCAGCAATTTTCAGCATGGTAATGAATATCATATGCTGGAAACAGCGAACTCATGGCCTCCTTCTCAGTTCACTGTTGCTCCTCACTATGCACAGCCATTTGGGGATCATAATATGAATAGCTTTCAGCCTCCGCCGGTGGCCGCGGCGTTTGGTGGCTTTGGTAATCAGTATCCTTATCAGTTTTTCCATGGCCCTGGTGGTGATGGATTGATGAGATTAGGACCCTCGGCTACAAAAGAAGCGAGGAAGAAGCGGATGGCGAGGCAGAGAAGGCTTTCTTCTCATCATCCTAGGCATCAAATTAACTTACAGAGTCAGGGTTCTGATCCAAATGCAAGGTTGGGTGTTGGTGAAAATTGTACTGGTGGTGTTGTGTCTGCTGCTGCGGCGGCGGCGCATCATGGGAATCCGGCGGCTAATTGGGTGTATTGGCCAACTATGGGTGGTGGTGTAGCTTCCATTGCACCAGTGGCTCCGGCAGAGGCTGTGCGGGTGGATAAACCGGCCATGCAGACACAGAATTATCATCATCAGGGTAGACTCTCATCTGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTAAGGTTCCTTTTACAAAAGGTGTTGAAGCAAAGCGATGTTGGAAGTCTGGGGAGAATTGTTCTACCAAAAAAAGAGGCAGAAACACATTTACCAGAACTAGAGGCAAGAGATGGAATCACTATAACAATGGAAGACATTGGCACCTCTCGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGGATGTATTTGCTAGAGAACACAGGTGACTTTGTTAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGAAAATATATGATAAGAGGAGTTAAAGTAAGGCAACAACCAGGGGCGAAACCAGCAGAGAGCAAGAAAACAGGAAAATCTCAGAAAAACCAGCATGTTAACAATGCGGCACCTCCTACAAATGCCACGCCATCTTCCACTCACCGCAAAAAATGA 2220 0.4667 MFYDEFPPLPDFPCMSSSSSSSSTPALPLKNLTCSTTSATTTTATTSSSSSSASSWAVLKPEAEENNNNNDDAEWNYCNKQDIYMHHHDPLEATTPAGGALSSTASMEVSQPQQFPDQAGFDGGGGGDCMDDVMDTFGYMELLESNEFFDPSSIFEGEENPFTQEVQVLPNQEEEQQQHQQEKHAIFENQNDLAFLGQQQEAEEGVSNNYQQFLGNDAEIQGGGGGGAMADDEMSMVFLEWLKSNKDSVSASDLRNVKLKKSTIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNNNNDNDGVANTFTEPFQDPTHQNQNNAINASGSFETEPNTCFMHQPWMADQTPLIASAAPPPPPQSQPQPQFQQPMVGYVGDPYTNGAVANTIHGSNFQHGNEYHMLETANSWPPSQFTVAPHYAQPFGDHNMNSFQPPPVAAAFGGFGNQYPYQFFHGPGGDGLMRLGPSATKEARKKRMARQRRLSSHHPRHQINLQSQGSDPNARLGVGENCTGGVVSAAAAAAHHGNPAANWVYWPTMGGGVASIAPVAPAEAVRVDKPAMQTQNYHHQGRLSSDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQPGAKPAESKKTGKSQKNQHVNNAAPPTNATPSSTHRKK 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121159g00004 739 MobiDBLite consensus disorder prediction 496 510 - -
Stsc121159g00004 739 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 236 715 IPR044800 GO:0003700
Stsc121159g00004 739 ProSiteProfiles B3 DNA-binding domain profile. 597 699 IPR003340 GO:0003677
Stsc121159g00004 739 MobiDBLite consensus disorder prediction 487 510 - -
Stsc121159g00004 739 Gene3D - 593 712 IPR015300 -
Stsc121159g00004 739 FunFam B3 domain-containing transcription factor FUS3 593 708 - -
Stsc121159g00004 739 Pfam B3 DNA binding domain 598 694 IPR003340 GO:0003677
Stsc121159g00004 739 SUPERFAMILY DNA-binding pseudobarrel domain 596 692 IPR015300 -
Stsc121159g00004 739 MobiDBLite consensus disorder prediction 716 733 - -
Stsc121159g00004 739 CDD BfiI_C_EcoRII_N_B3 595 696 - -
Stsc121159g00004 739 MobiDBLite consensus disorder prediction 37 71 - -
Stsc121159g00004 739 SMART B3_2 597 699 IPR003340 GO:0003677
Stsc121159g00004 739 MobiDBLite consensus disorder prediction 699 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121159g00004 Stsc-Chr121159 15972 21089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121159g00004 1 734 B3 DNA Binding Superfamily AT3G24650 43.766 4.87e-158 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc121159g00004 B3 1.3e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121159g00004 K09287 - gmx:100810343 764.222