Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121157g00005 ATGACGTCACGTTCAGGGAATGGTGGTCATGCTACCAATAGCGGAAAGACACGTGTCGGAAAGTACGATATCGGAAGGACACTGGGCGAGGGGAATTTCGCGAAGGTGAAGTTTGCGAAGAACACGGTCACTGGAGACAATGTCGCCATCAAGATTCTCGACAAGGAGAAAATTCTCAAGCACAAGATGATCAACCAGATAAAACGAGAGATATCAACAATGAAACTGATTAGACACCCTAATGTAATACGTATGTATGAGGTCATGGCTAGCAAGACAAAAATATACATTGTATTGGAATTTGTAACTGGTGGAGAGCTGTTTGATAAAATTGCAAGCAGAGGGAGATTGAAAGAAGAAGAAGCTAGAAGATATTTTCAACAGCTGATATGTGCCGTGGATTACTGTCATAGTAGAGGTGTTTGCCATAGAGACCTAAAGCCTGAGAACTTGTTGTTGGATGCTTCGGGAATGCTCAAAGTATCAGATTTTGGATTGAGTTCACTGCCTCAACAAGTTCGGGAAGATGGGCTGCTTCACACAACATGCGGTACACCAAATTATGTTGCCCCAGAGGTGATTCACAATAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCTTGTGGTGTCATTCTTTTCGTTTTAATGGCAGGCTATTTGCCCTTTGAAGACAACAATCTTGTGAATTTGTATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCTTGGTTCTCTACGAATGCAAAGAAGTTAATCACAAGAATACTCGAACCCGATCCTGCCAAACGGATTACAATTGCTGAAGTTATTGAGAATGAATGGTTCAAGAAGGGATACAAGCCTCCAAAATTTGAGCAGGCCAATGTTAGTCTTGATGATATAGATTCTATTTTTAGTGAATCAACGGATTCACAAAACCTTGTTGTTGAGAGGCGTGAAACGAGGCCTGCGGAACCTGTGGCCATGAATGCTTTTGAGCTTATCTCTACGTCTCAGGGTCTCAATCTCAGTAGTCTTTTCGAGAAACAAATGGGACTTGTTAAAAGGGAAACAAGATTCACCTCCAAATGTCCAGCAAATGAGATAATGACAAAAATTGAGGAAGCTGCAGGGCCTCTCGGTTTCGGTGTTAAGAAGAGCAACTATAAGTTAAAGATTCAAGGTGAAAAGACTGGACGTAAAGGTCAACTATCTGTAGCTACTGAGATCTTTGAAGTTGCTCCTGAACTTTATGTGGTTGAGTTGCGGAAATCTGAGGGAGATACTCTGGAATTTCACAAATTCTATAAGAATCTCTCGCCGGCATTGAAAGATATTGTTTGGAAAGCAGACCCAATCGACGAAGAAAATGATGGTTCCGGCTGTTCCAGCCCCTCAAAATAA 1389 0.4183 MTSRSGNGGHATNSGKTRVGKYDIGRTLGEGNFAKVKFAKNTVTGDNVAIKILDKEKILKHKMINQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASRGRLKEEEARRYFQQLICAVDYCHSRGVCHRDLKPENLLLDASGMLKVSDFGLSSLPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEDNNLVNLYKKIFKAEFTCPPWFSTNAKKLITRILEPDPAKRITIAEVIENEWFKKGYKPPKFEQANVSLDDIDSIFSESTDSQNLVVERRETRPAEPVAMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKCPANEIMTKIEEAAGPLGFGVKKSNYKLKIQGEKTGRKGQLSVATEIFEVAPELYVVELRKSEGDTLEFHKFYKNLSPALKDIVWKADPIDEENDGSGCSSPSK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121157g00005 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 439 - -
Stsc121157g00005 462 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121157g00005 462 Pfam NAF domain 321 381 IPR004041 GO:0007165
Stsc121157g00005 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Stsc121157g00005 462 FunFam Non-specific serine/threonine protein kinase 318 444 - -
Stsc121157g00005 462 SUPERFAMILY Protein kinase-like (PK-like) 19 325 IPR011009 -
Stsc121157g00005 462 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Stsc121157g00005 462 Gene3D Transferase(Phosphotransferase) domain 1 102 284 - -
Stsc121157g00005 462 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Stsc121157g00005 462 FunFam Non-specific serine/threonine protein kinase 15 317 - -
Stsc121157g00005 462 CDD STKc_SnRK3 21 276 - -
Stsc121157g00005 462 CDD CIPK_C 325 440 - -
Stsc121157g00005 462 FunFam Non-specific serine/threonine protein kinase 13 101 - -
Stsc121157g00005 462 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121157g00005 462 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121157g00005 462 Gene3D Kinase associated domain 1, KA1 319 444 - -
Stsc121157g00005 462 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121157g00005 Stsc-Chr121157 27031 34793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121157g00005 5 452 CBL-interacting serine-threonine protein kinases AT1G01140 69.383 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc121157g00005 Pkinase 4.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121157g00005 - - gmx:100788746 780.015