Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121157g00004 ATGAGAGAAACCGGTGTGAGAGGGGTTGAGGGTTTTGAGCGGAAGAAACACGGTGAGGTTTCTGGCTTTGCCGGAAGGAGAAACAAGGGGGAGAGCGAGGGTGGGTTTGCACCTGGTGTTTGGAGGAACTCTGGGAAGGGGAGTAGATTTCAAAGATTGAGATGGCATCAATCAAATGTCCATAACAGGAGTGGTCACTCGGTGTTTGTTGATCACTTACCAGTGGGTGTGTCCAAGAGAGAAATATACAAGAAGTTTGGAAAGGTTGGCTTCATATTGGATGTGTTCATATCTAGAAAGGAACGACGGAATGGAAAAGGCATTTTTGCTTTTGTTAGATACTACTCTCTTGTGGGTGCAGAAAAAGCTGTGAAATGGATTAATGGACTAACATGGGATGGATGCATACTCTATGCTACGTTATCTAGTGATAGGAGGGAAGGGGAAGTATCTTGGAGATTACGTTGA 468 0.4487 MRETGVRGVEGFERKKHGEVSGFAGRRNKGESEGGFAPGVWRNSGKGSRFQRLRWHQSNVHNRSGHSVFVDHLPVGVSKREIYKKFGKVGFILDVFISRKERRNGKGIFAFVRYYSLVGAEKAVKWINGLTWDGCILYATLSSDRREGEVSWRLR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121157g00004 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 135 IPR000504 GO:0003723
Stsc121157g00004 155 CDD RRM_SF 68 138 - -
Stsc121157g00004 155 Gene3D - 42 155 IPR012677 -
Stsc121157g00004 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Stsc121157g00004 155 SUPERFAMILY RNA-binding domain, RBD 57 149 IPR035979 GO:0003676
Stsc121157g00004 155 SMART rrm1_1 67 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121157g00004 Stsc-Chr121157 23607 24074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121157g00004 67 153 Eukaryotic Initiation Factors Gene Family AT1G22760 29.885 2.30e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121157g00004 - - ahf:112794598 68.1662