Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121155g00006 ATGGAAAAAGTAAGAGCTGGAACACTACTGCATGGTGTTCTTCACGTTACAATTTTTGAAGCTGATAATCTCTATGTGAATGACTGCTGCAACTGTTTCCCCAAGCTGTTGGATGAAACCTTCTCAAGTGGACAAATTGGTGCCCGTAGAATATACACAACCATAAAGTTAGGGAGCACTATAGTGGGCAAGACTAGAGTTATAAACCAGAGTAGTGAACACTTCAATTTTCAGTGGCATCAATCTTTAAGAATTTACACTGCTCATGTTGCAACTGAAGTTGTTTTTCATATCAAAGAAGATGACCCGATTGGTGCAAAAGTTATTGGAAGAGCATATTTCCCTGTGGAAGAGTTGGTAAATGGAGAAAATAAGGATATCTGGCTCCAAATCCTGAATAAGAAACATAAACCTCTTAGAGCAAAGCCTAGAATCCATGTGAGACTACAGTTTTTTAATGTCACTAAGGATGTTAACTGGTCTCAAGGGATCAAAGGTCTTGATTTTGCAGGGCTTACTCATTCATACTTTCCTCAAAGAACTGGTTGTAGAGTCACACTTTACCAAGATACTCACATTCCAAACACATTTTTCCCTGAAATCTTGCTAAGTAAGGGTAGGTACTATGAGCTGCATCGATGTTGGGAAGACATGTTTGATGCTATTTCGAAGGCGAAGCATTTGATTTACATAACAGGATGGTCTGTTTTCACCAAAATCACCTTGGTCAGGGAATCAAGTTGTAAGAAGAAGGAACTAAGTTGTGATTTGAATTTGACACTTGGTGAGCTTCTTATAAAGAAGGCCAATGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGACAGAACTTCAATTAAGTGGCTAAAGAATGATGGGGTTATGACTACTCATGATGAAGACACAGAAAGTTATTTCAATGGAAGTGGAGTGCATTGTGTTCTATGTCCTCGAAATCCTGATAAAGGTGAAAGCCTTATCCAAGGAACAGAGGTTGCTGCCATGTTTACACATCACCAAAAGATTGTAGTTGTGGACAGTGATATGCCAAATGGAAGATCAGATTGTAGGAGAAGAATTCTGAGTTTCATTGGTGGTATTGATCTATGTGATGGGAGATATGATACACCCTTCCATTCGATTTTCGGTACCTTAGGAACAATACACCATGATGATTTTCACCAGCCAAACTTTGAAGGAGCCTCAATCGATAAAGGCGGACCGAGAGAGCCTTGGCATGACATACATTGTCGGCTGGAAGGACCGGTCGCGAGGGATGTTCTAAAGAATTTCGAGCAAAGGTGGAGGAAACAAGGTAAGAAGGATGTTTCTCTTGTTGAAATTGACTCACTTCTTGACACTTTTGTTCCAGCACCAGTTGAAAAGTTCCCGGAAGATAATGAAGAAGCATGGAATGTTCAATTATTTCGATCAATCGATGGAGGAGCAGCTTTAGGCCTCCCAAATTCTGAAGAGGAAGTAGCAAAGTATGGCCTTATGAACCAAAAGGATCATATCTTTGAATGCAGCATCCAAAATGCTTATATTGCTGCCATAAGAAGAGCTAAGAGTTTTATCTATATAGAAAACCAGTACTTTATGGGAAGCTCTTTTGATTGGAATTCAGAGAACCTTCAAGTTCAAGAGGTGGGAGCCTTGCATCTTATTCCAAAGGAATTGTCTCTCAAGATTGTTAGCAAGATTGAAGCAGGAGGAAGGTTCAGTGTTTATATAGTGATTCCAATGTGGCCAGAGGGTATTCCTGAGAGTAACTCTGTTCAAACCATGTTGAATTGGCAGAAACAAACAATGGAAATGATGTACAGCGATGTAATCAAAGCTCTACAAGCCAAAGGGATTAGTGCTGACCCAAAAGACTATTTGAGTTTCTTTTGCCTTGGAAATCGTGAAAAGAAGAGAAGTGGAGAATATGAACCTTCTAAAAAGCCACAGCATGACTCAGATTATAGCAGAGCTCAGGAAGCAAGGAGATTCATGATCTATGTACATGCCAAAATGATGATAGTTGATGATGAATACATAATTATTGGATCCGCCAATATCAATCAGAGATCAATGGATGGATCTAGGGATACAGAGATTGCCATGGGAGCTTATCAACCATATCACATATCAAGAAATGAGCCAAGCAGGGGTCAGATACATGGGTTTAGAATGGCCTTGTGGTATGAGCACTTGGGTTTTCTAGATGGCTCTTTTCTTGTTCCTCAGAGTTTGGAATGTGTCAGACTTATAAACAACATTACAACAAGGTATTGGGACCTTTATTGTAGTGAAACCCTTCATGATGACTTGCCTGGGCATTTGCTTAGCTATCCCATTAAAGTAACAGAATGTGGTAAGGTCACAACACATGTTGGTGTGGAGCACTTCCCGGACACAAATGCACCAATTATTGGGTCGAAATCTGAACTTCCTTTTGTTTTGACTACTTAA 2457 0.3985 MEKVRAGTLLHGVLHVTIFEADNLYVNDCCNCFPKLLDETFSSGQIGARRIYTTIKLGSTIVGKTRVINQSSEHFNFQWHQSLRIYTAHVATEVVFHIKEDDPIGAKVIGRAYFPVEELVNGENKDIWLQILNKKHKPLRAKPRIHVRLQFFNVTKDVNWSQGIKGLDFAGLTHSYFPQRTGCRVTLYQDTHIPNTFFPEILLSKGRYYELHRCWEDMFDAISKAKHLIYITGWSVFTKITLVRESSCKKKELSCDLNLTLGELLIKKANEGVKVLMLVWDDRTSIKWLKNDGVMTTHDEDTESYFNGSGVHCVLCPRNPDKGESLIQGTEVAAMFTHHQKIVVVDSDMPNGRSDCRRRILSFIGGIDLCDGRYDTPFHSIFGTLGTIHHDDFHQPNFEGASIDKGGPREPWHDIHCRLEGPVARDVLKNFEQRWRKQGKKDVSLVEIDSLLDTFVPAPVEKFPEDNEEAWNVQLFRSIDGGAALGLPNSEEEVAKYGLMNQKDHIFECSIQNAYIAAIRRAKSFIYIENQYFMGSSFDWNSENLQVQEVGALHLIPKELSLKIVSKIEAGGRFSVYIVIPMWPEGIPESNSVQTMLNWQKQTMEMMYSDVIKALQAKGISADPKDYLSFFCLGNREKKRSGEYEPSKKPQHDSDYSRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGSRDTEIAMGAYQPYHISRNEPSRGQIHGFRMALWYEHLGFLDGSFLVPQSLECVRLINNITTRYWDLYCSETLHDDLPGHLLSYPIKVTECGKVTTHVGVEHFPDTNAPIIGSKSELPFVLTT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121155g00006 818 PANTHER PHOSPHOLIPASE D 8 808 IPR015679 -
Stsc121155g00006 818 SUPERFAMILY Phospholipase D/nuclease 510 748 - -
Stsc121155g00006 818 Gene3D Endonuclease Chain A 204 451 - -
Stsc121155g00006 818 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 665 692 IPR001736 GO:0003824
Stsc121155g00006 818 ProSiteProfiles C2 domain profile. 1 129 IPR000008 -
Stsc121155g00006 818 Pfam Phospholipase D Active site motif 335 373 IPR001736 GO:0003824
Stsc121155g00006 818 SUPERFAMILY Phospholipase D/nuclease 155 445 - -
Stsc121155g00006 818 Gene3D Endonuclease Chain A 482 712 - -
Stsc121155g00006 818 SMART C2_3c 13 128 IPR000008 -
Stsc121155g00006 818 FunFam Phospholipase D delta 205 454 - -
Stsc121155g00006 818 Gene3D C2 domain 9 163 IPR035892 -
Stsc121155g00006 818 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 334 373 IPR001736 GO:0003824
Stsc121155g00006 818 Pfam PLD-like domain 516 701 IPR025202 -
Stsc121155g00006 818 Pfam C2 domain 12 130 IPR000008 -
Stsc121155g00006 818 Pfam Phospholipase D C terminal 739 809 IPR024632 -
Stsc121155g00006 818 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 154 IPR035892 -
Stsc121155g00006 818 PIRSF PLD_plant 1 818 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc121155g00006 818 SMART pld_4 334 373 IPR001736 GO:0003824
Stsc121155g00006 818 SMART pld_4 665 692 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121155g00006 Stsc-Chr121155 33576 39585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121155g00006 6 818 Phospholipase D Gene Family (Wang group) AT3G15730 61.050 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121155g00006 K01115 - qsu:111988169 1120.92