Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121154g00011 ATGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAACGGAGTCATTGCATCCTTGTTGAGTGTCCATACACTGGGAACGCCTCCCTGCGCTAAATCAGAAACTGGAGACAGAGACACCTCTAACAAGAATGATGTGGCAGAGAGTTCTCTAGATGATAGTAACATTGTGACAGACAAGGCTGGATCAAGGAAAGCCATTACGCCTGGTACCCAATATCGTACATATAAGAGTTTGCAGTTGCAAAGACACAGTAATACTAGAAGTGAAAAGCCAATTGAAATTCTAAGAAGGGTGAGCGGAAATGACAAGTGTGCAGATTGTGGTAAACCTGAACCAGATTGGGCTTCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCATCGTAATCTTGGAGTACATATTTCAAAAGTAAGATCATTGACACTAGACGTGAAAGTCTGGGACCCTTATGTCTTATCCATGTTTAAGTCACTGGGAAATTACTTTGCAAACTCAGTTTGGGAAGATTTAGATTCAAAGAGTACTTCGCAAACTGATGATGATGCATCTGTTGGTTCATCCAATGCCAGTGGAGACAAAGTAGTTGACGCTAGAAAACCAAAACCTCATGATTCTATTTCATTAAAGGAGAAGTTCATTCATGCAAAGTACTCTGAGAAAATGTTCATTTGCCGGACAAAAGAAAGCGACTCTGTCCATTCCGTGGCAAAAAAAGTGTGGGAAAGCATTTGTGCCAATGACAAAAAAGCAGTTTACAGACATATTGTCAAGTCAGCTGTGGATGTCAATACCATCCATGGTCACACATCTGATGGTTCTTGCAACGTAACTTCACCAGATAATCCAAAAATACCATCATCGTCATCATCATCTCAATGTGAAAATCAGCTGATGGCTGAGAACTTACAACCTGGTTCTGGTGTTCTTCACCTGGCATGCCTAACTGCTGACGCTGGCATGGTGGAGCTGCTCCTACAATATGGTGCAAACGTTAGTGCTTGCGATTCAAAAGGTCAGACACCACTTCATTACTGTATTACAGGAGGGAACACTGAAGCTGCCAAAGTGCTACTTCTGAGGGGAGCCAATTCAAATGCTCAAGATAAAGAAGGCAACACTCCTATTAAGCTAGCATCACAATCCAACTCCATTGATGCTGAAACTTTGGCTCTCTTGGCAAGAAGATGA 1215 0.4214 MQAENAVDQMDWMEKINGVIASLLSVHTLGTPPCAKSETGDRDTSNKNDVAESSLDDSNIVTDKAGSRKAITPGTQYRTYKSLQLQRHSNTRSEKPIEILRRVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPYVLSMFKSLGNYFANSVWEDLDSKSTSQTDDDASVGSSNASGDKVVDARKPKPHDSISLKEKFIHAKYSEKMFICRTKESDSVHSVAKKVWESICANDKKAVYRHIVKSAVDVNTIHGHTSDGSCNVTSPDNPKIPSSSSSSQCENQLMAENLQPGSGVLHLACLTADAGMVELLLQYGANVSACDSKGQTPLHYCITGGNTEAAKVLLLRGANSNAQDKEGNTPIKLASQSNSIDAETLALLARR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121154g00011 404 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 76 242 - -
Stsc121154g00011 404 Pfam Putative GTPase activating protein for Arf 96 232 IPR001164 GO:0005096
Stsc121154g00011 404 PANTHER CENTAURIN/ARF 2 402 IPR045258 GO:0005096
Stsc121154g00011 404 Pfam Ankyrin repeats (3 copies) 318 394 IPR002110 GO:0005515
Stsc121154g00011 404 CDD ArfGap 97 226 - -
Stsc121154g00011 404 MobiDBLite consensus disorder prediction 184 199 - -
Stsc121154g00011 404 SUPERFAMILY ArfGap/RecO-like zinc finger 94 233 IPR037278 -
Stsc121154g00011 404 MobiDBLite consensus disorder prediction 278 300 - -
Stsc121154g00011 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 94 240 IPR001164 GO:0005096
Stsc121154g00011 404 ProSiteProfiles PH domain profile. 1 21 IPR001849 -
Stsc121154g00011 404 ProSiteProfiles Ankyrin repeat region circular profile. 313 344 - -
Stsc121154g00011 404 SMART ANK_2a 346 375 IPR002110 GO:0005515
Stsc121154g00011 404 SMART ANK_2a 313 342 IPR002110 GO:0005515
Stsc121154g00011 404 ProSiteProfiles Ankyrin repeat region circular profile. 346 378 - -
Stsc121154g00011 404 Gene3D - 238 404 IPR036770 -
Stsc121154g00011 404 PRINTS HIV Rev interacting protein signature 106 125 IPR001164 GO:0005096
Stsc121154g00011 404 PRINTS HIV Rev interacting protein signature 125 142 IPR001164 GO:0005096
Stsc121154g00011 404 PRINTS HIV Rev interacting protein signature 148 169 IPR001164 GO:0005096
Stsc121154g00011 404 Gene3D Arf GTPase activating protein 75 237 IPR038508 -
Stsc121154g00011 404 MobiDBLite consensus disorder prediction 184 211 - -
Stsc121154g00011 404 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Stsc121154g00011 404 SMART arf_gap_3 94 239 IPR001164 GO:0005096
Stsc121154g00011 404 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Stsc121154g00011 404 MobiDBLite consensus disorder prediction 32 68 - -
Stsc121154g00011 404 SUPERFAMILY Ankyrin repeat 311 394 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121154g00011 Stsc-Chr121154 49236 51654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121154g00011 97 232 C2H2 Transcription Factor Family AT3G07940 38.686 2.82e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121154g00011 K12489 - gmx:100792517 476.092