Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121154g00001 ATGTCGGCGGTGGTATCAGCTCTTGTTCAAGTCATTGGTGGCAATAATCCACCGCATCAGCATCATCAACAACTCTCTCACTCTTCTTCCACTTCTATTCACGATAATCAACAGTCTCAACCACCATCATCGGTATCGCAACATCAAGGAGTGGTAAGAAGACACTACAGAGGGGTTAGGCACCGGCCATGGGGGAAATGGGCGGCAGAGATTCGCGATCCGAAGAAGGCAGCAAGGGTTTGGCTTGGAACTTTTGAAAGTGCTGAAGAAGCTGCGCTTGCTTATGATGAAGCCGCTCTTAGATTCAAAGGAAGCAAGGCTAAGCTCAACTTTCCAGAAAGGGTTCATCTCACACATCAATTTGGTTACCTCACTAACCGTCCTCCACAACCACAAATTAGCAATAATAATAACAATGATAGTGAACAACTACCTACCACAAATATGTTTGTTTCTTCTTCCTCTTCGTCTTCATCGTCATCTTCTGGTTTTTCTATGCAATTTGGAGCTTCTTCTTCTAAGCCTCCTCCTGGGAATGAATTGGACAAGTCATCATGA 558 0.4462 MSAVVSALVQVIGGNNPPHQHHQQLSHSSSTSIHDNQQSQPPSSVSQHQGVVRRHYRGVRHRPWGKWAAEIRDPKKAARVWLGTFESAEEAALAYDEAALRFKGSKAKLNFPERVHLTHQFGYLTNRPPQPQISNNNNNDSEQLPTTNMFVSSSSSSSSSSSGFSMQFGASSSKPPPGNELDKSS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121154g00001 185 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Stsc121154g00001 185 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Stsc121154g00001 185 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Stsc121154g00001 185 MobiDBLite consensus disorder prediction 16 50 - -
Stsc121154g00001 185 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Stsc121154g00001 185 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700|GO:0006355
Stsc121154g00001 185 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Stsc121154g00001 185 PANTHER DNA-BINDING DOMAIN 30 159 IPR044808 GO:0003700|GO:0009873
Stsc121154g00001 185 MobiDBLite consensus disorder prediction 123 185 - -
Stsc121154g00001 185 MobiDBLite consensus disorder prediction 13 51 - -
Stsc121154g00001 185 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Stsc121154g00001 185 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Stsc121154g00001 185 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121154g00001 Stsc-Chr121154 1240 3358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121154g00001 1 156 AP2-EREBP Transcription Factor Family AT5G61890 53.614 3.10e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc121154g00001 AP2 6.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121154g00001 - - vra:106766671 172.555