Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121152g00006 ATGAGCTTCCTTCAAGGGATCATCGATTCCTTCAACTCCGTCTTCTCTTCTTCTGATCCTTCTTCCTCTTCTCCTTCTTCTTCTCAATCTCACCTTGATTCCACCTCCATGGAAGCTCCTTCTTCCTCTCCTTCTTCAGTTTCGAACGAGCGCGTCGCTTTCAAGCTCAAAGGTTACTACGATTTGGCCACTCAGGAGATCGCTAAGGCGGTTCGCGCCGAAGAGTGGGGTTTGGTCGACGACGCTATTCTTCACTACAAGAACGCTCACAGGATCCTCCTTGAAGCCCATTCTACCCCTGTTCCTTCCTTCATCACTTCCAGCGAACAAGCAAAGGTGCAATCTTATCGTCAGAAGATATCGAAATGGCAGGGCCAAGTATCTGAGAGATTACAGGCTCTAAGTAGACGAGCAGGAAGCTCATCTGCCAATCAGAGCACCTCAAACCTTGCAAAAACTGCTGCAGTTCCACTTAAGCAATCAAATGGTAGAAAAAATGTGGCACAAAGGTATTCTCAACCAACAGGGCAGGTGAATAACGTTGGAACCCCAAAATCTACTCAAGCCGGTGTAAATTATGATTCAAAACTGGTTGAAATGATTAACACTGCAATAGTAGACAGAAGTCCTTCTGTTAGATGGGATGATGTTGCTGGGCTTGAGAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGGAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTACTCTTCGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAAGCTGTAGCTTCAGAATCTGATGCAACATTTTTCAATGTCTCCTCTGCATCACTGACATCGAAATGGGTGGGTGAAGCTGAAAAACTTGTAAGGACGCTATTCTCGGTCGCTGTATCCAGGCAGCCGTCTGTGATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGAACGGAAAATGAGAATGATGCCAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGGCCTCCAATAGTAATGATATTGTGATTGTAATCGGTGCAACCAACAAACCACAGGAATTGGATGATGCAGTTCTTAGGAGGCTGGTAAAGAGAATCTATGTCCCTTTACCTGATGAAAATGTTCGGAGACTTCTGCTAAAACACAAACTCAAGGGTCAATCATTCTCATTACCAAGCAGAGATCTGGAAAGACTTGCTAGAGAGACAGAAGGTTATTCTGGAAGTGATCTTCAAGCATTATGTGAAGAGGCTGCAATGATGCCAATTAGAGAGCTGGGATCTAACATTCTTACTGTTAATGCAAATCAGGTAAGAGGACTAACCTATGATGATTTCAAAAAGGCAATGACTGTCATCAGACCAAGCTTAAAGAAAAGCAAGTGGGAAGAGCTGGAGCGCTGGAATGAGGAGTTTGGCTCTAATTGA 1461 0.4408 MSFLQGIIDSFNSVFSSSDPSSSSPSSSQSHLDSTSMEAPSSSPSSVSNERVAFKLKGYYDLATQEIAKAVRAEEWGLVDDAILHYKNAHRILLEAHSTPVPSFITSSEQAKVQSYRQKISKWQGQVSERLQALSRRAGSSSANQSTSNLAKTAAVPLKQSNGRKNVAQRYSQPTGQVNNVGTPKSTQAGVNYDSKLVEMINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESDATFFNVSSASLTSKWVGEAEKLVRTLFSVAVSRQPSVIFIDEIDSIMSTRTENENDASRRLKSEFLIQFDGVASNSNDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQSFSLPSRDLERLARETEGYSGSDLQALCEEAAMMPIRELGSNILTVNANQVRGLTYDDFKKAMTVIRPSLKKSKWEELERWNEEFGSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121152g00006 486 Gene3D - 210 480 IPR027417 -
Stsc121152g00006 486 FunFam AAA-type ATPase family protein 382 464 - -
Stsc121152g00006 486 MobiDBLite consensus disorder prediction 15 47 - -
Stsc121152g00006 486 SMART AAA_5 247 383 IPR003593 GO:0016887
Stsc121152g00006 486 SMART smart 56 133 IPR007330 -
Stsc121152g00006 486 CDD RecA-like_spastin 216 379 - -
Stsc121152g00006 486 Gene3D - 49 138 - -
Stsc121152g00006 486 PANTHER AAA DOMAIN-CONTAINING 109 485 - -
Stsc121152g00006 486 FunFam AAA-type ATPase family protein 49 138 - -
Stsc121152g00006 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 483 IPR027417 -
Stsc121152g00006 486 ProSitePatterns AAA-protein family signature. 353 372 IPR003960 GO:0005524|GO:0016887
Stsc121152g00006 486 Pfam AAA+ lid domain 406 437 IPR041569 -
Stsc121152g00006 486 Pfam ATPase family associated with various cellular activities (AAA) 251 381 IPR003959 GO:0005524|GO:0016887
Stsc121152g00006 486 CDD MIT_spastin 56 134 - -
Stsc121152g00006 486 FunFam Spastin, putative 210 394 - -
Stsc121152g00006 486 Gene3D - 382 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121152g00006 Stsc-Chr121152 35140 39282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121152g00006 210 436 Calmodulin-binding Proteins AT3G56690 43.220 2.36e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121152g00006 K13254 - gmx:100780946 758.059