Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121151g00002 ATGTTTGGGAGGGCACCAAAGAAGAGCGATAACACCAGGTACTACGAGATCCTTGGAGTCTCCAAGAACGCTTCTCAGGATGATCTCAAGAAGGCTTACAAGAAAGCAGCCATCAAGAATCACCCCGACAAAGGCGGTGATCCCGAGAAGTTTAAAGAGCTTGCTCAGGCTTATGAGGTTCTGAGTGATCCTGAAAAGCGTGAAATTTACGATCAGTATGGTGAGGATGCTCTGAAAGAAGGAATGGGTGGAGGCGGTGGCGGCCACGATCCCTTTGATATCTTCCAGTCTTTCTTTGGTGGGAGTCCTTTTGGCGGAGGTGGTAGTAGCAGAGGTAGGAGGCAGAGAAGGGGAGAAGACGTGGTTCACCCCCTCAAGGTCTCACTTGAAGACCTGTACCTCGGAACATCAAAGAAGCTCTCACTCTCTCGCAACGTACTTTGCTCAAAGTGCAGTGGCAAAGGGTCTAAGTCTGGGAATTCTACAAAGTGCGCTGGTTGCCAAGGAACTGGTATGAAGGTTTCCATCAGGCACCTTGCTCCTTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACCGGTGAAACCATCAGTGACAGGGACCGTTGTCCACAGTGCAAAGGAGAGAAGGTTGTGCAGGAGAAGAAGGTTCTTGAGGTCCATGTGGAGAAGGGTATGCAGAATGGACAGAAGATCACATTCCCTGGAGAAGCCGACGAAGCTCCAGATACTATCACTGGGGATATTGTGTTTGTCCTTCAGCAGAAGGAGCACCCCAAGTTCAAAAGAAAGGCAGAAGACCTTTTTGTAGAACACACTTTGTCCCTGACTGAGTCCCTATGTGGCTTCCAATTTGTTCTCACTCACCTGGATGGCAGGCAACTCCTCATCAAATCAAACCCTGGTGAAGTTGTCAAGCCTGACTCATTCAAAGCAATTAATGACGAGGGAATGCCAATATACCAGAGACCATTCATGAAGGGCAAGCTTTACATCCACTTCACTGTGGAATTCCCCGAGTCTCTGAACCCTGATCAGGTTAAGGCTCTAGAAGCTGTTCTGCCACCAAAGCCTTCCTCACAGTTAACAGACATGGAGCTTGATGAGTGTGAGGAGACCACACTACATGATGTCAACATGGAGGAAGAGTCAAGGAGGAAGGCGCAAGCTCAGCAGGAGGCATATGACGAAGATGATGACATGCCCGGTGGTGCACAGAGGGTACAGTGCGCCCAGCAGTAG 1254 0.4928 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCSGKGSKSGNSTKCAGCQGTGMKVSIRHLAPSMIQQMQHPCNECKGTGETISDRDRCPQCKGEKVVQEKKVLEVHVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTESLCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPIYQRPFMKGKLYIHFTVEFPESLNPDQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEESRRKAQAQQEAYDEDDDMPGGAQRVQCAQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121151g00002 417 SUPERFAMILY Chaperone J-domain 8 108 IPR036869 -
Stsc121151g00002 417 CDD DnaJ 14 63 IPR001623 -
Stsc121151g00002 417 Pfam DnaJ domain 14 71 IPR001623 -
Stsc121151g00002 417 MobiDBLite consensus disorder prediction 379 398 - -
Stsc121151g00002 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Stsc121151g00002 417 MobiDBLite consensus disorder prediction 379 417 - -
Stsc121151g00002 417 FunFam dnaJ protein homolog 10 109 - -
Stsc121151g00002 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 399 IPR044713 GO:0006457|GO:0030544
Stsc121151g00002 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Stsc121151g00002 417 Gene3D - 262 344 - -
Stsc121151g00002 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Stsc121151g00002 417 FunFam Chaperone protein dnaJ 3 289 360 - -
Stsc121151g00002 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Stsc121151g00002 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Stsc121151g00002 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Stsc121151g00002 417 FunFam DnaJ subfamily A member 2 148 214 - -
Stsc121151g00002 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Stsc121151g00002 417 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Stsc121151g00002 417 Gene3D DnaJ domain 10 109 IPR036869 -
Stsc121151g00002 417 SMART dnaj_3 12 66 IPR001623 -
Stsc121151g00002 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Stsc121151g00002 417 Gene3D - 148 214 - -
Stsc121151g00002 417 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Stsc121151g00002 417 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Stsc121151g00002 417 Gene3D - 110 260 - -
Stsc121151g00002 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 369 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc121151g00002 417 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Stsc121151g00002 417 CDD DnaJ_C 119 346 - -
Stsc121151g00002 417 FunFam Chaperone protein dnaJ 3 215 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121151g00002 Stsc-Chr121151 13238 15876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121151g00002 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.25e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121151g00002 K09503 - gmx:547558 727.628