Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121149g00002 ATGACTCTTCCATCAGATTCCGATACAAAACTTGAGCTACTCAAACTGCAAGTTGAGAAAGAAGAGGAGGAGGAAGAAGAAGATGCCTTCTTCATTGCACAAATGGCAAACACAGTTGTGGTTCCATTTGCTGTGAGGACCACAATAGAGCTTGGTGTATTTGAGATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTTTCAGCAAAAGATATTGTTGATCAAATTGGAACCAACAACCCTGAAGCTGCAACAATGTTGGATCGTGTTCTTAGTCTTCTTGCATGTCACTCGTTCCTACGTTGTTGTATTGTTCAAGATCCAGAAAACCCTAATAGCTTGCATGAGAGGCTGTATAGTCTCTCGCCTGTTTCCAAATACTTTGTGACTGATGCTGATGGTTTGACTTTTGGGCCCAACTTGATGCTTCTTTTGGATAAAGTCTTAAATCCAGCCTGGATTGAACTAAAAGGAGCGATCTTAGAAGGAGGTATACCATTCAAGAGGGCTTATGGCATGAACACCTTCGAGTATACAAACAAGGATCCAAGATTCAGTGAAGTTTTAAACAAAGCTATGCACAGCTCCTCCACTATATTAATGAAGAAGATTCTTGATGTGTACAGAGGCTTTGACCATGTCAATAAACTAGTCGACGTTGGTGGCGGTTTTGGGATCAGTCTCAAATTGATCACTTCGAAATACCCTCATATTCAGGGTGTCAATTTTGATTTGCCTCATGTTATAGAAAATGCCCCTCTCTATGCTGGTGTGGAGAACATAGGAGGAGATATGCTTGAGAGAATTCCCCAGGGAGATGCCATTTTCCTAAAGTGGGTACTTCATGATTGGGACGATGACCACTGCTTGAAGATATTGAAGAATTGCCACAATGCAATACCCAATAATGGAAAGGTGATTGTGGTGGAAAAGATAATTCCAATTGTGCCTGAGTCAACATCATCAGCTGTGGTCAAAGACTCTTTTACATCAGATGTTTTCATGATGACTCATTCCCCAGGGGGAAAGGAAAGAACCCACAAAGATTTCATGGAACTCGCTGTTCGAACTGGATTTACTTCCATATCACTTGTGTGTTGTGCCTATGGCTTATGGGTTATGGAGTTCTACAAAAACCCAATAAAACCACAAATAAATAAATAA 1161 0.41 MTLPSDSDTKLELLKLQVEKEEEEEEEDAFFIAQMANTVVVPFAVRTTIELGVFEIIAKAGEGAKLSAKDIVDQIGTNNPEAATMLDRVLSLLACHSFLRCCIVQDPENPNSLHERLYSLSPVSKYFVTDADGLTFGPNLMLLLDKVLNPAWIELKGAILEGGIPFKRAYGMNTFEYTNKDPRFSEVLNKAMHSSSTILMKKILDVYRGFDHVNKLVDVGGGFGISLKLITSKYPHIQGVNFDLPHVIENAPLYAGVENIGGDMLERIPQGDAIFLKWVLHDWDDDHCLKILKNCHNAIPNNGKVIVVEKIIPIVPESTSSAVVKDSFTSDVFMMTHSPGGKERTHKDFMELAVRTGFTSISLVCCAYGLWVMEFYKNPIKPQINK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121149g00002 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 376 IPR029063 -
Stsc121149g00002 386 Gene3D Vaccinia Virus protein VP39 129 377 IPR029063 -
Stsc121149g00002 386 Pfam O-methyltransferase domain 152 358 IPR001077 GO:0008171
Stsc121149g00002 386 PANTHER O-METHYLTRANSFERASE 35 375 IPR016461 GO:0008168
Stsc121149g00002 386 FunFam Caffeic acid 3-O-methyltransferase 12 127 - -
Stsc121149g00002 386 FunFam Caffeic acid O-methyltransferase 128 377 - -
Stsc121149g00002 386 Pfam Dimerisation domain 44 94 IPR012967 GO:0046983
Stsc121149g00002 386 Gene3D - 13 127 IPR036388 -
Stsc121149g00002 386 SUPERFAMILY "Winged helix" DNA-binding domain 23 130 IPR036390 -
Stsc121149g00002 386 PIRSF O-mtase 11 377 IPR016461 GO:0008168
Stsc121149g00002 386 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 377 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121149g00002 Stsc-Chr121149 8653 12165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121149g00002 17 377 Monolignol Biosynthesis Gene Families AT5G54160 47.091 2.26e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121149g00002 K13066 - gmx:100789402 451.44