Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121148g00004 ATGGCAATTGTAGCATCCTCTGCCATCTCTCTTCTCTTCTTTGCTCTCACTCTATGCCTTAGAGCCACATTTGCTGACTATGGTGGAGGATGGCAAGGTGGCCATGCCACATTTTATGGTGGTGGAGATGCATCCGGCACAATGGGTGGTGCTTGTGGCTATGGAAACTTGTATAGCCAAGGTTATGGGACTAACACTGCAGCACTCAGCACTGCTCTATTCANNNNNNNNNNCTCTTGCTATGAGATGAAGTGTGACGGTGACCCCAAATGGTGCCTCCCCGGCACCATCACCGTCACCGCCACGAACTTCTGCCCACCTAACTTTGCCTTGTCCAATGACAACGGTGGCTGGTGCAACCCTCCCCTCCAACACTTTGATCTCGCCGAACCCGCTTTCCTTCAAATTGCTCAATACAGAGCTGGAATTGTTCCGGTTTCCTTTAGAAGAGTCCCCTGTGTGAAGAAAGGAGGAATAAGGTTCACGGTGAATGGACACTCATACTTCAACTTGGTCCTGATCACGAACGTGGGCGGTGCCGGAGACGTTCACTCGGTGTCTATCAAGGGATCAAGGACAGGGTGGCAAACCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACTCATACCTCAATGGCCAGAGCCTCTCCTTCCAAGTCACAGCCAGTGATGGCAGAACACTCACTTGCAACAATGTTGCACCTTCCAACTGGCAATTTGGACAAACATTTGAGGGGTCACAGTTTTAG 753 0.5033 MAIVASSAISLLFFALTLCLRATFADYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFXXXXSCYEMKCDGDPKWCLPGTITVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTASDGRTLTCNNVAPSNWQFGQTFEGSQF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121148g00004 250 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Stsc121148g00004 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 158 IPR007112 -
Stsc121148g00004 250 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Stsc121148g00004 250 SMART dpbb_1 66 148 IPR007112 -
Stsc121148g00004 250 Gene3D - 157 250 IPR036749 -
Stsc121148g00004 250 PANTHER EXPANSIN-A15 11 250 IPR002963 GO:0009664
Stsc121148g00004 250 CDD DPBB_EXPA_N 30 153 - -
Stsc121148g00004 250 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Stsc121148g00004 250 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Stsc121148g00004 250 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Stsc121148g00004 250 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Stsc121148g00004 250 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Stsc121148g00004 250 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Stsc121148g00004 250 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Stsc121148g00004 250 Gene3D - 19 153 IPR036908 -
Stsc121148g00004 250 SUPERFAMILY Barwin-like endoglucanases 30 176 IPR036908 -
Stsc121148g00004 250 FunFam Expansin 158 250 - -
Stsc121148g00004 250 Pfam Lytic transglycolase 67 148 IPR009009 -
Stsc121148g00004 250 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Stsc121148g00004 250 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Stsc121148g00004 250 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Stsc121148g00004 250 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Stsc121148g00004 250 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Stsc121148g00004 250 FunFam Expansin 21 154 - -
Stsc121148g00004 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121148g00004 Stsc-Chr121148 24361 26044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121148g00004 7 250 Expansin Gene Family AT2G40610 80.645 6.67e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121148g00004 - K20628 gmx:100807183 457.988