Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121148g00003 ATGTCGTTTTGGCACCACCGTCGAACTCAATCCGAGCTTCATTTCCGAATCCCCGACGAATTTGATCTCGATCTCGATGTTGATGTGGATTTCGATGTCGATTCCTTCGATTTCAAGAATCCCCTTCCTAACAACAAACCCCTCATCCCACCCGGATCCGACAACCAACTATCTACTCTCTCGCCAGCCTCGGCCACCGTGCCGCCCATTGTGGACACCAGTAAAACCACCGTGAGGCCTGGTCACCGGCGCAGCAACTCGGCGGACGGTCCCTCTTCTTCTTCGTTGTTGGAAGGCATTGAAGCCAAGAAGGCCATGTCCCCTGACAAGCTCGCTGAATTGTGGACCGTCGATCCCAAGCGAGCCAAGAGGATTCTGGCAAACCGTAAATCCGCTGCCCGTTCAAAAGAGAGGAGAGCTTATTATGTGGTGGAACTTGAGAGAAAAATCCATTCTCTTCAAACGGAAGCAACTACTCTTTCTGCCCAATTAAATCTTTTCCAGAGAGATACAAGTGGTCTGACTACTGAAAACACCGAACTTAAGCTACGCTTACAAGCTATGGAGCAACAAGCTAAGTTATGTGATGCTCTAAATGAAGCACTGAAAACAGAAGTTGATAGACTCAAGATTGCTACTGGAGAGATGGTAACACGTGCCAATACATATGGTTTGGCAATGCATCAGCCTTCATATTCTCAAGCTCCTTTCTTCTCGCTTCAGCCACAACATTTTGCAGGCGAATTTCACACTACGCAAATGCCGCCTTTGCGTCCACGGTCGTCTAAGATGTCTTCCTCTCGACCTCTGATTGATGTAGCCACACCATACAATTTGTCAAACATGTTGCCAAGTGATCCTGTTGGCCAATTTCAGGGGCTAGACATAAGCCATGCGATCCCTCATGTTCTGGTTCATGACGGTCCCTCCATTTCTGTTAATAAAATCAACAATGCCTTTTGA 963 0.4766 MSFWHHRRTQSELHFRIPDEFDLDLDVDVDFDVDSFDFKNPLPNNKPLIPPGSDNQLSTLSPASATVPPIVDTSKTTVRPGHRRSNSADGPSSSSLLEGIEAKKAMSPDKLAELWTVDPKRAKRILANRKSAARSKERRAYYVVELERKIHSLQTEATTLSAQLNLFQRDTSGLTTENTELKLRLQAMEQQAKLCDALNEALKTEVDRLKIATGEMVTRANTYGLAMHQPSYSQAPFFSLQPQHFAGEFHTTQMPPLRPRSSKMSSSRPLIDVATPYNLSNMLPSDPVGQFQGLDISHAIPHVLVHDGPSISVNKINNAF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121148g00003 320 Coils Coil 143 163 - -
Stsc121148g00003 320 SMART brlzneu 116 180 IPR004827 GO:0003700|GO:0006355
Stsc121148g00003 320 Pfam bZIP transcription factor 120 177 IPR004827 GO:0003700|GO:0006355
Stsc121148g00003 320 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 5 246 - -
Stsc121148g00003 320 SUPERFAMILY Leucine zipper domain 120 174 IPR046347 GO:0003700|GO:0006355
Stsc121148g00003 320 CDD bZIP_plant_RF2 121 170 IPR044759 GO:0003700|GO:0006355
Stsc121148g00003 320 MobiDBLite consensus disorder prediction 49 73 - -
Stsc121148g00003 320 MobiDBLite consensus disorder prediction 42 95 - -
Stsc121148g00003 320 Coils Coil 185 205 - -
Stsc121148g00003 320 Gene3D - 119 172 - -
Stsc121148g00003 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 118 181 IPR004827 GO:0003700|GO:0006355
Stsc121148g00003 320 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121148g00003 Stsc-Chr121148 14326 17082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121148g00003 5 297 bZIP Transcription Factor Family AT2G40620 45.566 1.37e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc121148g00003 bZIP_1 7.9e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121148g00003 - - aprc:113852914 356.681