Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121147g00006 ATGGCAGAATCCCTGAATAACTCTGTTTCTCCATCAATGCCTTCACTGTTACCACCAAAGCAAGAACAAGAATCTGCACCAATAACAATAGTTGCAGCAACAGAGAGCTTAGAGTTGTTTAAGAATGAGAAGAAGAAGAGAGGAAGGCCAAGGAAGGATGATTCAAATAGGGACATGATTTTGACATCTCGACCACCAAAAGCAGAATCATGGACAATGACTATGTCATTTTCATCACCACTACCACCACCACCAGGCTTCACTTTCTCACCTCCTCCACCACCACTACCACCAAAGCCTCATTCTAGATATGGAGGTGCGGGTTCTGCAGTTATTTCTGGTGGAAGCTTCACACCACATTTGCTGAATGTTTTTGCTGGACAGGATATTGCTGGAAAGATCATGTCATTCGTCGAAAAGGGTCCGAGAGCAGTTTGTATTCTTTCTGCCACAGGAACAATCTCTAAAGCTACCATATGCCGTGTTCCTAATTCTGATCAATTTTGGACTTATGAGGGTCGATTTAAGATCTTAACTTTATCCGGATCATATGCGGTCATGGAGAGTGGTGACATGATGACTGGTGGACTGAGTGTCGTGCTAGAATGCTCTGGCAGCGACGTGTTTGGCGGCAGAGTTGCCGGTCTGTTAACTGCTGCTGGCCCCGTTCAAATTGTGGTGGGGAGCTTCAGGCCTCATGCTTCTAAAAGGAAGCGCAGCCGCGAAGAACACACTACAAGTCAGCTTGTGGTGGCTGAGCCTATTGCAGTCTGTACAGACACAATGGCAGCGACAAACCTTGCGTCGCAAGCAAATCCAAAACAAAGCCAGAGAGAGTTTGCTGCTGCTAATGATTCTGAAGAGTTTCCAGATCAGAAGATATCTCCATATATCAACAAATCATTGTCTGATGTCTAG 918 0.4553 MAESLNNSVSPSMPSLLPPKQEQESAPITIVAATESLELFKNEKKKRGRPRKDDSNRDMILTSRPPKAESWTMTMSFSSPLPPPPGFTFSPPPPPLPPKPHSRYGGAGSAVISGGSFTPHLLNVFAGQDIAGKIMSFVEKGPRAVCILSATGTISKATICRVPNSDQFWTYEGRFKILTLSGSYAVMESGDMMTGGLSVVLECSGSDVFGGRVAGLLTAAGPVQIVVGSFRPHASKRKRSREEHTTSQLVVAEPIAVCTDTMAATNLASQANPKQSQREFAAANDSEEFPDQKISPYINKSLSDV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121147g00006 305 CDD DUF296 118 230 IPR005175 -
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 268 305 - -
Stsc121147g00006 305 Gene3D - 119 255 - -
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 38 60 - -
Stsc121147g00006 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 263 IPR039605 GO:0003680
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 1 66 - -
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 1 19 - -
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 82 101 - -
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 82 105 - -
Stsc121147g00006 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 115 244 - -
Stsc121147g00006 305 MobiDBLite consensus disorder prediction 268 282 - -
Stsc121147g00006 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 119 230 IPR005175 -
Stsc121147g00006 305 ProSiteProfiles PPC domain profile profile. 114 252 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121147g00006 Stsc-Chr121147 24567 27407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121147g00006 44 255 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 41.121 1.71e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121147g00006 - - aip:107626418 204.527