Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121142g00009 ATGCTCACTATGCTCCTCTCTTCAGTAACCCTCAACACCTACGCCACCACACCCTTCCTCATAATTGCCTTCACCATCATCTCCGCACTTACATGGCTACTCTTCCTGAGGCCCAACTCGGCCCAACGCAACCTTCCACCAGGCCCACCTGGCCTCCCCATAGTGGGCAACCTCCTCTCCCTTGACCCAGATCTCCACACTTACTTCACCTCCCTGGCCCACACCTACGGCCCAATATTCAAGCTCCAGCTCGGCAGCAAGCTCGGCATCGTCGTAACCTCCCCTTTGCTAGCCCGCCAAATACTCAAGGAACACGACACCGTTTTCGCCAACCGCGACGTCCCTGCTGCCGCAAGAGCCGCCACCTACGGCGGATCCGACATCGCATGGACACCGTACGGACCCGAGTGGCGTATGCTGAGAAAAGTGTGCGCCCTCAAGATGCTGAGCCACAACACACTCGACTCCGTGTACGAGCTCCGCCGCAACGAGGTCCGGAAAACGGTGGCGTTCTTGTACGGTCGGGTCGGGTCAGAGGTGAACGTTGGGGAACAAGGGTTCCTGACGGTGCTGAATGTGATAACGGAGATGATGTGGGGCGGGGCGGTGGAGGGGAAGGAGAGGGAGGGATTGGGGGCGGAGTTCAGGGAGGCGGTGGCGGAGATGACGGAGCTGTTTGGGAAGCCGAACGTGTCGGATTTTTTTCCTTTGTTGGCAAGGTTTGACTTGCAGGGGGTGGAGAGGCAGATGCAGGCGCTGGTGCCGCGGTTCGATGGAATCTTCGAGAGGATGATTGGTGAGAGGGTGAGAGGAGGGAAGAAGGAGCGCAATGATTTCTTGCAGTTTCTGTTGAACTTAATGGACGAAGGTGACTCCAAGACCCCACTCACTATGGTTCAACTCAAGGCACTCCTCATGGATATGGTGGTGGGTGGATCTGACACATCTTCCAACACGATCGAATTTGCAATGGCTGAAATGATAAACAATTCAGAGGTAATGAAGAAAGTCCAAGAAGAATTAGAAGCAGTAGTTGGCAGAGACAACATTGTAGAAGAGTCACACATTCACAAGCTACCTTATTTGCGTGCAGTTATGAAAGAAACCCTTCGATTGCACCCGGCACTTCCACTCTTAGTCCCACACTGCCCCAGTGAAACCACCACTGTGGGAGGCTACACAATTCCAAAGGGTTCTCGCGTGTTCGTGAACGTGTGGGCCATACACAGAGACCCTTCTATTTGGGACAATCCACTTGAGTTTGATCCTACTAGGTTCTTGAATGATGATGATGATGGTGGAGCCAATAACAAATGGGACTTTAGTGGGAGTGACTTCAGGTATTTCCCATTTGGTTCAGGGAGAAGAATATGTGCTGGGATTGCAATGGCTGAGAGGACGGTTTTGTATATACTTGCTACTCTTGTGCACTCCTTTAATTGGAAGGTTCCTGAAGGGGAAAATCTTGATATGTCAGATAAGTTTGGTATTGTTCTTAAGAAGAAGATATCTTTAGTTGCCATTCCCACACTACGATTATCTAAATCTAAATTAGATCTTTATAAGTAG 1569 0.5124 MLTMLLSSVTLNTYATTPFLIIAFTIISALTWLLFLRPNSAQRNLPPGPPGLPIVGNLLSLDPDLHTYFTSLAHTYGPIFKLQLGSKLGIVVTSPLLARQILKEHDTVFANRDVPAAARAATYGGSDIAWTPYGPEWRMLRKVCALKMLSHNTLDSVYELRRNEVRKTVAFLYGRVGSEVNVGEQGFLTVLNVITEMMWGGAVEGKEREGLGAEFREAVAEMTELFGKPNVSDFFPLLARFDLQGVERQMQALVPRFDGIFERMIGERVRGGKKERNDFLQFLLNLMDEGDSKTPLTMVQLKALLMDMVVGGSDTSSNTIEFAMAEMINNSEVMKKVQEELEAVVGRDNIVEESHIHKLPYLRAVMKETLRLHPALPLLVPHCPSETTTVGGYTIPKGSRVFVNVWAIHRDPSIWDNPLEFDPTRFLNDDDDGGANNKWDFSGSDFRYFPFGSGRRICAGIAMAERTVLYILATLVHSFNWKVPEGENLDMSDKFGIVLKKKISLVAIPTLRLSKSKLDLYK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121142g00009 522 SUPERFAMILY Cytochrome P450 46 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 Gene3D Cytochrome P450 35 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 FunFam Cytochrome P450 - like protein 35 506 - -
Stsc121142g00009 522 CDD CYP76-like 73 509 - -
Stsc121142g00009 522 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PANTHER OS08G0547900 PROTEIN 12 518 - -
Stsc121142g00009 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Stsc121142g00009 522 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 97 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121142g00009 522 Pfam Cytochrome P450 46 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121142g00009 Stsc-Chr121142 47571 50811 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121142g00009 12 520 Cytochrome P450 AT4G12300 60.194 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121142g00009 - - gmx:100787507 748.429