Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121142g00002 ATGGGGAGGCAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACTGCAGACGAAGATAAGAAGCTTATAAACTTCATTCTCACCAATGGACAGTGCTGCTGGCGTGCTGTGCCCAAGCTCGCGGGGCTCCGCCGATGCGGCAAGAGCTGCCGCCTTCGCTGGACCAATTACCTTCGCCCGGACCTTAAGAGAGGACTCCTCACTCAGGCAGAGGAGCAGCTTGTTATTGATCTTCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCAGCAAGGTTACCAGGAAGAACAGATAATGAGATCAAGAATCATTGGAACACACACATCAAGAAAAAGCTTATTAAGATGGGGATTGACCCTGTCACTCATGAGCCTCTCAGTAAAAATGAAAGTTCCTCCTCCCCTCAAGACCAAAAGAATTTGCAGCAGCAACAACAAGAAGAAAAAGAACCTAACAAGGAAGCTAATAATAATAATAATAATAATGGTGGTCTCAACTCTGAGGAGAATAATTCAAACTCATCATCTTCATCCCCAACTGAAAATTCTTCATCAGGAGAAGAATCCATTTTGCTAGATGATGATTCTCTAATGATGAATGATTTATGGATGGATCATGAAAATCCACTAGTGGATGCATTATTATGGGACACTACTACCCCTAATGTGGAGGGCACAAACACTAGTGTTGATGACATGGGCCTCATCACAGTGCCATCTTATTGGGAGGATAATAATAATTATGCTTGGTTATTGGACTTTGATGAGGACATTGGTGTTCAAGATTTTGGTTTTAATTGTTTCAATAATGACATAGATCATCATTCAAATGCAATGCAAAAACTATAG 858 0.4231 MGRQPCCDKLGVKKGPWTADEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLSKNESSSSPQDQKNLQQQQQEEKEPNKEANNNNNNNGGLNSEENNSNSSSSSPTENSSSGEESILLDDDSLMMNDLWMDHENPLVDALLWDTTTPNVEGTNTSVDDMGLITVPSYWEDNNNYAWLLDFDEDIGVQDFGFNCFNNDIDHHSNAMQKL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121142g00002 285 Gene3D - 12 67 - -
Stsc121142g00002 285 FunFam MYB transcription factor 70 159 - -
Stsc121142g00002 285 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 202 - -
Stsc121142g00002 285 CDD SANT 16 61 IPR001005 -
Stsc121142g00002 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc121142g00002 285 SMART sant 66 114 IPR001005 -
Stsc121142g00002 285 SMART sant 13 63 IPR001005 -
Stsc121142g00002 285 Gene3D - 71 116 - -
Stsc121142g00002 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc121142g00002 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc121142g00002 285 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc121142g00002 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc121142g00002 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc121142g00002 285 MobiDBLite consensus disorder prediction 125 191 - -
Stsc121142g00002 285 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc121142g00002 285 CDD SANT 71 112 IPR001005 -
Stsc121142g00002 285 MobiDBLite consensus disorder prediction 128 145 - -
Stsc121142g00002 285 MobiDBLite consensus disorder prediction 158 191 - -
Stsc121142g00002 285 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121142g00002 Stsc-Chr121142 21706 23375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121142g00002 1 272 MYB Transcription Factor Family AT4G12350 54.895 2.38e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121142g00002 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121142g00002 K09422 - gmx:100786965 319.316