Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121140g00006 ATGCGTTTCTTCCGTAAAGACGGTTATAATTGGCGGAAGAAAAGGGGTGGAAGAACCGTGGGAGAAGCACATGAACGTCTTAAGATTGGAAATGTTGAAATACTAAATTGTTACTATGCGCATGGAGAGGAGAACCGTAGTTTCCAGAGGAGGAGCTACTGGATGCTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAAGGGGAACTCAGGTTCTGGACCTAACCCACTATTGTCTCAAGGCTCCTCTCCTGAATTTAGTCAGAATCAAAGCTCACGTACTACGATTGACCCTGGGACAATATCTGTTTTGGTTGATTCATGTGAACCTACTCAGAATTTCTCCAGTCCTGAATCTGTGGAAGTTTCCTCTGATATCATTAGAAACAATGGAATGTTTCAGTTAGATGAAACAGATGCAGTCTTACGCCAATTGAAGCAACAATTAAGTTTGGATAAGGACAGATGTGAAGAAAGCTATCCCATGTACAAGAATCAATCTGAAGCTTTCACTGTGCCAAATGATTATGGACAAGCCTATTATGAGTATAATGGAAGACAAGGTGACAATGGTAAACATTATAATCAACTATTAAACTGTGATCAACCTGATGCAAATGAAAACGCCTTATCTTGGACAGAGGTGCTTGAATCGTGTAAGCCTGCAAGCTTGACCAATTTACCCGAGCAACATGCGTATGAGGCATATGGAAATGGTAGGCTACATTCTTCGCAAAGTGTAAGGATTGACAATCAAGGAAACAATCAGTGGATAAACTCCAACAATTTTAATGCTGAAAACTCTGTCTTCTCTCGTCCTCAAGATTGTGGAACCAAATTTCCTCTGTATTCGACAGTTGAAGCTCAACAACGTAGTTCCGATTATTATGCAACATCATTTGATGAAATCCAAATACCACAACCTTTGGATGCAGATTTAAGCCTGACAATTTCACAGAAACAAAAATTCACAATTAGGACAATCCTCCCAGAATGGTGTTATGCCACAGAAACTTCAAAGGTGGCCATTATTGGTTCATTTCTCTGTCTTCCCTCGAATTCTACCTGGGCTTGTATGTTTGGTGATATTGAAGTGCCTGCTGAGATAATTCAGGATGGTGTTATCTGTTGTGAAGCTCCACCCCACCTTCCTGGAAAGGTTAATCTCTGCATTACTTCTGGAAATCGAGAGTCCTGCAGTGAAGTTCGAGAGTTTGAATTTCGCGATAAGACGAATAGTTGCACTCATTGTAACTCAATGGAAACAGAAACTACTAGAAGCCTGGACGAGCTGTCATTACTTGTTAAATTTGCACAGATACTCCTTTCTGCTCCAGCTAAAAAAAATGACAACATGGAACCTGTATATCATATTCCAGTGGAACACAAAGCAGATGATGATTCATGGAGCCATGTTAAGTCTCTTCTGGTCGGCAGTGGAACTTCATCAGGTACAATTGATTGGCTTGTTGAAGAGCTGCTGAAGGATAGGCTACAGCTGTGGCTTTCTGGAAAATCCCAGGAAATAGATGAAGCAACTGGCTGCCATTTGTCCAAGAAAGAGCAGGGGATTATACACATGGTTGCTGGATTGGGTTATGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGCGTGAATATTAATTTTCGTGACATCAAAGGGTGGACCGCCCTTCATTGGGCTGCACAGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATTGCTGCTGGTGCATCTGCTGGAGCAGTAACTGATCCGACATCTGCAGACCCAGATGGGAAAACTGCTGCAGCTATTGCTGACAGCAATGGCCATAAGGGACTGGCCGGTTATCTTTCAGAAGTGGCTCTAACTAGCCATCTTTCGTCCCTCACCCTGGAAGAGTGTGAGATTGCTAAAGATACTGCCGAGATTGATGCAGAGTTAACCGTCAGTCATGTGTCGAAGGAAAATATTGGAGAGGATCGGATTTCACTGGCTGCTGTTAGAAATGCTGCTCTTGCTGCTTCTCGGATACAGGCTGCGTTTCGTGCTCATTCTTTCAAAAAGCGGAGAGAGAGGGAAGCTGCTGCAGCAGCTGCTGCTTCTGCTGCTAGTCTAGATGGGTATGATATTGATGTTGATGCCATCAGTAACATTCTAGCCCTTTCTCCCAGCTCAGGACATAGCTTCGGGAGGTCACGTGATTACAATGCAGCTGCTTTATCAATTCAGAAGAAATATCGAGGTTGGAAAAGTCGCAAAGATTTCTTAGAACTGCGGCAAAAAGTAGTAAAGATACAGGCTCATGTGAGGGGTCACCAGGTTCGGAAGCAATACAAGATAATAGTATGGGCAGTTGGAGTCTTGGAGAAGGTAGTGCTGCGCTGGCGGAGAAAAGGATCCGGTCTACGAGGTTACAAACAAGAGTCAATTGATGGAAATGATGACGATGATTTTCTCAAGGTGTTTCGGAAGCAGAAAGTGCATGTAGCAATTGAAAAAGCTTTAACTCGGGTGCTGTCCATGGTCCATTCTAAGGGTGCCCGTCAACAATATCGCCGCATGCTTGAGATGTATCGCGAAGCTAAGGCTGAACTTGGTAGCACGAGTGATGAAGGGCCATTGTCCACGTCTGGAGGGGACACATCAATTATAGATGACGATGATGAATTCTTTCAAATTCCCGGCGGCTGGGAGATACTCTAG 2703 0.4362 MRFFRKDGYNWRKKRGGRTVGEAHERLKIGNVEILNCYYAHGEENRSFQRRSYWMLDPAYEHIVLVHYRETKGNSGSGPNPLLSQGSSPEFSQNQSSRTTIDPGTISVLVDSCEPTQNFSSPESVEVSSDIIRNNGMFQLDETDAVLRQLKQQLSLDKDRCEESYPMYKNQSEAFTVPNDYGQAYYEYNGRQGDNGKHYNQLLNCDQPDANENALSWTEVLESCKPASLTNLPEQHAYEAYGNGRLHSSQSVRIDNQGNNQWINSNNFNAENSVFSRPQDCGTKFPLYSTVEAQQRSSDYYATSFDEIQIPQPLDADLSLTISQKQKFTIRTILPEWCYATETSKVAIIGSFLCLPSNSTWACMFGDIEVPAEIIQDGVICCEAPPHLPGKVNLCITSGNRESCSEVREFEFRDKTNSCTHCNSMETETTRSLDELSLLVKFAQILLSAPAKKNDNMEPVYHIPVEHKADDDSWSHVKSLLVGSGTSSGTIDWLVEELLKDRLQLWLSGKSQEIDEATGCHLSKKEQGIIHMVAGLGYEWALNPILSCGVNINFRDIKGWTALHWAAQFGREKMVASLIAAGASAGAVTDPTSADPDGKTAAAIADSNGHKGLAGYLSEVALTSHLSSLTLEECEIAKDTAEIDAELTVSHVSKENIGEDRISLAAVRNAALAASRIQAAFRAHSFKKRREREAAAAAAASAASLDGYDIDVDAISNILALSPSSGHSFGRSRDYNAAALSIQKKYRGWKSRKDFLELRQKVVKIQAHVRGHQVRKQYKIIVWAVGVLEKVVLRWRRKGSGLRGYKQESIDGNDDDDFLKVFRKQKVHVAIEKALTRVLSMVHSKGARQQYRRMLEMYREAKAELGSTSDEGPLSTSGGDTSIIDDDDEFFQIPGGWEIL 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121140g00006 900 Pfam Ankyrin repeats (3 copies) 532 618 IPR002110 GO:0005515
Stsc121140g00006 900 SUPERFAMILY E set domains 329 413 IPR014756 -
Stsc121140g00006 900 Coils Coil 844 864 - -
Stsc121140g00006 900 Pfam IPT/TIG domain 329 405 IPR002909 -
Stsc121140g00006 900 ProSiteProfiles IQ motif profile. 673 699 IPR000048 GO:0005515
Stsc121140g00006 900 MobiDBLite consensus disorder prediction 73 101 - -
Stsc121140g00006 900 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 864 - -
Stsc121140g00006 900 SMART CG_1_2 1 72 IPR005559 GO:0003677
Stsc121140g00006 900 FunFam Calmodulin-binding transcription activator 2 734 782 - -
Stsc121140g00006 900 SUPERFAMILY Ankyrin repeat 527 619 IPR036770 -
Stsc121140g00006 900 MobiDBLite consensus disorder prediction 864 886 - -
Stsc121140g00006 900 ProSiteProfiles IQ motif profile. 758 782 IPR000048 GO:0005515
Stsc121140g00006 900 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Stsc121140g00006 900 FunFam Calmodulin-binding transcription activator 2 323 417 - -
Stsc121140g00006 900 ProSiteProfiles CG-1 DNA-binding domain profile. 1 77 IPR005559 GO:0003677
Stsc121140g00006 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 786 IPR027417 -
Stsc121140g00006 900 Gene3D Immunoglobulins 323 418 IPR013783 -
Stsc121140g00006 900 MobiDBLite consensus disorder prediction 71 101 - -
Stsc121140g00006 900 Gene3D - 734 782 - -
Stsc121140g00006 900 Gene3D - 423 623 IPR036770 -
Stsc121140g00006 900 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Stsc121140g00006 900 Pfam IQ calmodulin-binding motif 760 779 IPR000048 GO:0005515
Stsc121140g00006 900 ProSiteProfiles IQ motif profile. 735 764 IPR000048 GO:0005515
Stsc121140g00006 900 Pfam CG-1 domain 1 70 IPR005559 GO:0003677
Stsc121140g00006 900 SMART iq_5 734 756 IPR000048 GO:0005515
Stsc121140g00006 900 SMART iq_5 669 691 IPR000048 GO:0005515
Stsc121140g00006 900 SMART iq_5 757 779 IPR000048 GO:0005515
Stsc121140g00006 900 ProSiteProfiles Ankyrin repeat region circular profile. 558 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121140g00006 Stsc-Chr121140 15207 22609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121140g00006 1 893 CAMTA Transcription Factor Family AT1G67310 47.516 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc121140g00006 Ank_2 2.4e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121140g00006 K21596 - gmx:100791430 1065.83