Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121139g00005 ATGGATGAGACTCCCAATTTTGAATGTTCACAAATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTCGACAGTGGATTCAAGAGGGAACTAAATGCAATCATTTCACAACTACCAAAGCGTAGACAAACCATGCTTTTCTCAGCAACCCAGACAAAGTCAATTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGTGTGCACGAGGAGTCTGTGACTGCCACTCCTACTCTCCTGAAGCAAATTGTGATGGAGGTTGCACTTGACCAAAAGTTAAACATGCTGTGGAGTTTCATAAAGACACACCTTCAGTCGAAAATACTTGTTTTTCTTTCAAGTTGTAAACAGGTAAAATTCGTGTTTGAAGCATTTAAGAAACTACACCCTGGCATTCCATTGAAGTGTCTTCATGGGAGGATGAAGCAGGAAAGAAGAATGGCAATCTATTCTGAGTTTTGTGAGAAGCGCTCTGTTCTCTTTTCGACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAAGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAGTCTGTAGCATCATACATACACAGAGTTGGTCGTACAGCTCGTTATAAATCAGTTGGAAAGTCAGTTTTATTTCTAATGCCCTCGGAAATGCAAATGTTTGAAAAGTTAAAAGCAGCAAAAGTTCCTGTTCACTATAATAAGCCAAAGAAAGAATTGGTGCAACCGGTTTCGACTTTGTTGGCGTCTTTACTGGTCAAGTATCCAGATCTGCAGCATCGGGCTCAAAGAGCCTTTGTCACATATTTGAGATCCATACATATACAGAAGGATAAAGAGATATTTGATGTTATGAAACTACCAGTTGATGCATATTCAGCATCATTAGGCTTACCAATGACCCCAAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGCATTGGCAAAAACAATTTTAGATGAACCAGAAAATCAAGAAGAGAAAAATGAATTGGAGATATCCAAAAAGAATCTAGACTCAAGTGATTCTGAGGACGAGGAAACAGAAAATGATCTTCTTTTGGCGGCTGATAACACAAAAGAAGGGGAAGGAAAGGCATCTGAAGACACAGAAATCATGCCTGCAACTCGTATATTGAAGAAAAAGAAGCTCAAGATCAATGTACATCGTCCACTGGGGTCTAGGGTTGTATTCGATGATGAAGGCCACACACTTCCTCCACTAGCCAGGATTGCTGATGCTCAAAGTGGCAAGGAATCAGTGTTGCTTGACCCAGAACAAAAAGCTGAATACTACAGAAAGATGCGCGAGGATTTGAAGAAGGCAGACAAGGAAGACAAGCTTCTGGAGCGACAGCGGCGTAGAGAAAAAAGAATCAAACAGAAGATGAAGTGGAAGGAAGGAAATATGGATGAAGACGAAGATGATGATGTTTCCGGGTCCGAATCAGATAAAGCCACGGCAAGACCGAATAAGAAGAGTAAAGTATATTTTGACAGTGACAGTGATGATGATGGTGAAAGAAATGAAGTGACAGGGAAGGGAGCCATTGGTGCTGGCTCTGTTAGTTTGGAGGAGCAAGAAGCACTAGCTTTGAAGTTATTGAATTCCATGCACTCATAG 1638 0.4096 MDETPNFECSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTMLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMEVALDQKLNMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPESVASYIHRVGRTARYKSVGKSVLFLMPSEMQMFEKLKAAKVPVHYNKPKKELVQPVSTLLASLLVKYPDLQHRAQRAFVTYLRSIHIQKDKEIFDVMKLPVDAYSASLGLPMTPKIRFLNQKIKSKAALAKTILDEPENQEEKNELEISKKNLDSSDSEDEETENDLLLAADNTKEGEGKASEDTEIMPATRILKKKKLKINVHRPLGSRVVFDDEGHTLPPLARIADAQSGKESVLLDPEQKAEYYRKMREDLKKADKEDKLLERQRRREKRIKQKMKWKEGNMDEDEDDDVSGSESDKATARPNKKSKVYFDSDSDDDGERNEVTGKGAIGAGSVSLEEQEALALKLLNSMHS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121139g00005 545 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 16 24 IPR000629 -
Stsc121139g00005 545 Gene3D - 82 326 IPR027417 -
Stsc121139g00005 545 MobiDBLite consensus disorder prediction 486 516 - -
Stsc121139g00005 545 MobiDBLite consensus disorder prediction 324 373 - -
Stsc121139g00005 545 MobiDBLite consensus disorder prediction 439 458 - -
Stsc121139g00005 545 CDD SF2_C_DEAD 84 215 - -
Stsc121139g00005 545 SMART DUF4217_3 245 308 IPR025313 -
Stsc121139g00005 545 MobiDBLite consensus disorder prediction 358 373 - -
Stsc121139g00005 545 Coils Coil 437 457 - -
Stsc121139g00005 545 Gene3D - 1 80 IPR027417 -
Stsc121139g00005 545 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 92 250 IPR001650 -
Stsc121139g00005 545 SMART helicmild6 123 206 IPR001650 -
Stsc121139g00005 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 225 IPR027417 -
Stsc121139g00005 545 MobiDBLite consensus disorder prediction 324 347 - -
Stsc121139g00005 545 PANTHER RNA HELICASE 3 352 - -
Stsc121139g00005 545 MobiDBLite consensus disorder prediction 439 527 - -
Stsc121139g00005 545 Coils Coil 329 349 - -
Stsc121139g00005 545 Pfam Domain of unknown function (DUF4217) 250 306 IPR025313 -
Stsc121139g00005 545 Pfam DEAD/DEAH box helicase 4 58 IPR011545 GO:0003676|GO:0005524
Stsc121139g00005 545 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 70 IPR014001 -
Stsc121139g00005 545 Pfam Helicase conserved C-terminal domain 96 205 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121139g00005 Stsc-Chr121139 19776 22678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121139g00005 15 215 Eukaryotic Initiation Factors Gene Family AT5G11170 29.187 3.12e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121139g00005 K14776 - gmx:100792106 844.343