Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121134g00005 ATGAGCTGCAACGGGTGCCGCATACTCCGCAAAGGTTGCAGTGATGACTGCAGAATAAGGCCATGCCTGGAGTGGATAAACTCCTCGGAGTCCCAAGCAAATGCCACACTCTTCCTTGCCAAATTCTACGGTCGCACTGCCTTGCTCAACCTCATCGCTGCTGCTCCCCAAAACCTTGCAGCAGCTGTGTTCAGGTCCTTGTTGTATGAGGCTTGTGGGAGAATAGTCAATCCCACATATGGGTCAATGGGCTTGTTCTGCACGGGGCAATGGGCACGATGCGAGGCTGCTGTCCGTGCTGTCTTGATGGGCTTCAAGCCCAATGATGAGGTCGCCCCTTTTCGTTCGCCAAGCTGGGGCACAATTCCCCGCATTCCTCCCACATCTTGGGACATACGCCACGTGTCAAGACTCAACACCGGTCTGGCTGACGTCAGAGAGAGAACCCGGTTCAAGAGAACTGGGACGGTCATCAAGCCCCAACCACATCTGGCTTCTTTGGAGTCATACTTATTGAGCCAGATTCGACCCAATCAAACCAGGGGGGAAACTGGGATCAACTTGGAACTCTCACTCGGCTTTCATTGA 588 0.5374 MSCNGCRILRKGCSDDCRIRPCLEWINSSESQANATLFLAKFYGRTALLNLIAAAPQNLAAAVFRSLLYEACGRIVNPTYGSMGLFCTGQWARCEAAVRAVLMGFKPNDEVAPFRSPSWGTIPRIPPTSWDIRHVSRLNTGLADVRERTRFKRTGTVIKPQPHLASLESYLLSQIRPNQTRGETGINLELSLGFH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121134g00005 195 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Stsc121134g00005 195 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Stsc121134g00005 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121134g00005 Stsc-Chr121134 16681 18492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121134g00005 1 147 AS2 family AT1G68510 59.864 1.23e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc121134g00005 LOB 4.4e-21 No_clan