Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121134g00002 ATGAGCCCGTCTAATAAGAACGTGGCAAACGCCGTCGGTGGTAAAACCGCAAGAGCATGTGACAGCTGCATAACGAAGAGAGCACGATGGTATTGTGCTGCCGATGATGCTTTCCTTTGCCAAGCTTGCGACTCTTCTGTTCACTCTGCTAACCCACTAGCTCGCAGGCACGAGAGGCTGCGTTTGAAATCCGCCTCCTCTAACTCTTCCAAGGATTCAGAACCCAGCAACGCTACCTCTGCTCCCACCTGGCACCATGGCTTTACAAAGAAAGCTCGGACGCCCCGAAACAATCGTAATCATTCATCTTCTTCAACTCGTCGAACATCCAAGTCTTCTTGGAGCCGCAACAACAACCAGCACCCTTTTCATCTGGTTCCGGAAGAGGGCGAAGGCTCCGATGAAGTGAATTCCCATGAAGAGAACGAGGCGCAGCTTCTTTATAGGGTTCCTGTATTCGATCCCTTTGTAGCTGAGTTACGCAGCACTAGTCCTGCTGAGAATAACAAAAAAGAGAGCGAAGAGAGCAAGGGATCTTTTGGTTTTCACTTACATGGGTTTCTACCATCGGAAGCTGATCTTGCTGAGTTCGCGGCTGATGTGGAGAGCTTGTTGGGTAGGGGAATGGAGAACGAGTGCATTGGGATGGAAGAGCTTGGGCTTATTGATAACAAGGAGGATGAATCTTGGGAGTGTTCTGTGGGCAGTGGGAATAATGATGATAATAAGGCAGTGAAGGTGGAAATGGAACACGAACATACGGATGCTACTTGTAGTGGTTGCAAGCTGGACGAGGGAGATAATCAGGTGGTTGAGTTGAGCTTTGACTATGAGGAGATAGATAAGGAGAAAGTCAAAGAAAACGATGAAGATGCAATTAATGATAACAAGAGTAAGATATTGCTGCAGCTGGATTACGAGGGAGTAATCAATGCGTGGGGTGGTACCCAAAAATCTCCATGGACTACCGGTCAAAAACCAAACTTGGATCTCCATGACTGCTGGCCTCATACCATGGCAACAGGCGGAACAGAGGTTCATCATGGTTATGGTGAATTGATTGGATTGGGGTGTAACCCATCATCACTAATGTTGGGAGACGGGGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGCGCCGAACAAGGTTGTTCTCCAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCTGAGAAGAGGCCCAGAATGAAAGGGAGATTCGTCAAGAGATCATCCTTTGCCGCACCACCAACAGTACCGCCATTTCCCTTGATTGCTAAATAA 1290 0.4783 MSPSNKNVANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERLRLKSASSNSSKDSEPSNATSAPTWHHGFTKKARTPRNNRNHSSSSTRRTSKSSWSRNNNQHPFHLVPEEGEGSDEVNSHEENEAQLLYRVPVFDPFVAELRSTSPAENNKKESEESKGSFGFHLHGFLPSEADLAEFAADVESLLGRGMENECIGMEELGLIDNKEDESWECSVGSGNNDDNKAVKVEMEHEHTDATCSGCKLDEGDNQVVELSFDYEEIDKEKVKENDEDAINDNKSKILLQLDYEGVINAWGGTQKSPWTTGQKPNLDLHDCWPHTMATGGTEVHHGYGELIGLGCNPSSLMLGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSSFAAPPTVPPFPLIAK 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121134g00002 429 MobiDBLite consensus disorder prediction 98 122 - -
Stsc121134g00002 429 MobiDBLite consensus disorder prediction 66 84 - -
Stsc121134g00002 429 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Stsc121134g00002 429 MobiDBLite consensus disorder prediction 61 140 - -
Stsc121134g00002 429 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Stsc121134g00002 429 CDD Bbox1_BBX-like 19 62 - -
Stsc121134g00002 429 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 414 - -
Stsc121134g00002 429 SMART bboxneu5 15 62 IPR000315 GO:0008270
Stsc121134g00002 429 Pfam CCT motif 370 412 IPR010402 GO:0005515
Stsc121134g00002 429 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121134g00002 Stsc-Chr121134 5983 7395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121134g00002 6 412 C2C2-CO-like Transcription Factor Family AT1G25440 46.774 1.71e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc121134g00002 CCT 9.8e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121134g00002 - - gmx:100782921 446.047