Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121133g00003 ATGGGGATTGAGATCGTGGAACCCAACACTTGCATTAGGGGTTGCTGCACTAGTCCCTCCATTCCTCTCCATCTTCCTCCTTCCTCTTACTCTCTACTCTCTCCCATTGCACGAGGGGCAGAAAGTATTGTATATGAAGGGAATTTGGATGGCAAGAAGGTTGCAGTGAAGAAACCCATCTTATCAATTTCAGAGGACATTGATAAGTTTCATAAAGAATTGCAATTGCTATGCAAGCTAGATCACCCGGGAATAGCGACATTAATTGCAGCCCATGCAAAACCACCTAATTACCTGTTTTTCTTCGAATTCTATGAATCTTTGAATCTTGCCCAGAAGTTACATGTGGAAGAATGGATCCCAACTATCAATCATGCACTCCTATTAACAATGCAACTAGCGAAGGCGTTGCAATATCTGCATAATCTCGGGGTTCTTCATAGAGATATAAAACCGGCAAATATCCTTCTTGACAAAAGTCTTTGCCCACACCTCACAGATTTTGGTTTAGCAGAATACAAGAATAATCTTAAGGGAGTATCTCTACAGAATTGGAAGTCTTCCGGAAAACCAACGGGCGGTTTTCACAAAAGGAACATGGTTGGAACACTAATTTACATGGCACCTGAAATATTGAGAAAGGAATTACATACAGAAAAATCAGATGTATACAGTTTTGGTATATCAATCAATGAACTCCTAACTGGTGTTGTGCCATATACCGATCTTCGAGCAGAAGCACAGGCTCACACAGTGCTTGAGATGAACTATACTGAGCAGCAACTGACTGCAGCTGTTAATGATGGATTACGGCCATCCCTTGCTACCGAGGAATTCGGTATACCAGCAAGGTTATTGTCAATGATACAGAAGTGCTTGGATGCAAATCCCGAAAGCAGACCTTCCTTTGATGATATTGTTCAGGAACTTGATCTCATTTTGGAAGATAGGAAGATAAAGAAGGCTGAAGATATGTATGTTAGACCTTGCGAGTTTCACGCTGATCAACTTGTAGACAAGGCCAACCTTCAGGTTTATCAAGAGAGTTTCAACTGGTCCACTCAAGGCGAAATTTCAGCTCAGCATGCCTCTATTCCAACTGATTCTGGTTTGAGAACTTGGAGTGAATCTTATGATGAACCCATGGTGTACCAACCGACACTTTCTTGGGGTTCTTATGCTACATGTGGAAGAAGGGAGACGATGGAGGACACACATTTCATTCTTCCCCATTTTTGCGACGTAAAGGATCTCTATGCTTTTGGTATCTTTGATGGCCATAGAGGTGCAGCAGCAGCTGAGTTTTCCTTTAGAGCTGTACCAGCATTTTTGCGGTCTTTAGATTTTATGGGCAGTCCTGCTAATGCACTAGTTGAAGCATTTCTTAGGACAGATTCTGCCTTTAGAAAAGAACTTGATACGTATCGCAAATCCGGCAGATGTATCCAGAAGGATTGGCATCCTGGCTGTACAGCAATTACTGCTCTTATAGTCAGGAACAAACTATTTGTTTCCAACCTAGGTGATTGCAGGGCAATATTATGTCGTGATGGTAATCCCATTGCTTTAAGTAAGGATCATGTAGCAAGCTGTCTACAAGAGCGAGAGCGTGTTATTCGACATGGTGGTCACGTACATTGGCAAGTTGATACCTGGAGGGTTGGTCCTCCTGCGCTTCAGGTTACTCGTTCTATTGGCGATGATGATCTGAAGCCTGCTGTGACTGCGGAACCTGAGATAACTGAGACTATCTTATCTGCAGAGGATGAGTTTCTGGTGATGGGTAGTGATGGGCTGTGGGATGTTATGAGCGGCGAGGAGGTAATAAAAATAATAAGAGAGACAGTTAAAGAGGGTGGAATGTGTTCTAAGAGATTGGCTACTGAAGCAGTGGAGCGTGGCAGCAGAGATAACATTACTGTCATTGTTGTCTTTTTACGTCCTGTAACTACAGCAGAAAGAATTTATTAG 1971 0.4267 MGIEIVEPNTCIRGCCTSPSIPLHLPPSSYSLLSPIARGAESIVYEGNLDGKKVAVKKPILSISEDIDKFHKELQLLCKLDHPGIATLIAAHAKPPNYLFFFEFYESLNLAQKLHVEEWIPTINHALLLTMQLAKALQYLHNLGVLHRDIKPANILLDKSLCPHLTDFGLAEYKNNLKGVSLQNWKSSGKPTGGFHKRNMVGTLIYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVNDGLRPSLATEEFGIPARLLSMIQKCLDANPESRPSFDDIVQELDLILEDRKIKKAEDMYVRPCEFHADQLVDKANLQVYQESFNWSTQGEISAQHASIPTDSGLRTWSESYDEPMVYQPTLSWGSYATCGRRETMEDTHFILPHFCDVKDLYAFGIFDGHRGAAAAEFSFRAVPAFLRSLDFMGSPANALVEAFLRTDSAFRKELDTYRKSGRCIQKDWHPGCTAITALIVRNKLFVSNLGDCRAILCRDGNPIALSKDHVASCLQERERVIRHGGHVHWQVDTWRVGPPALQVTRSIGDDDLKPAVTAEPEITETILSAEDEFLVMGSDGLWDVMSGEEVIKIIRETVKEGGMCSKRLATEAVERGSRDNITVIVVFLRPVTTAERIY 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121133g00003 656 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121133g00003 656 ProSiteProfiles PPM-type phosphatase domain profile. 389 646 IPR001932 -
Stsc121133g00003 656 Gene3D - 381 651 IPR036457 -
Stsc121133g00003 656 SUPERFAMILY Protein kinase-like (PK-like) 23 328 IPR011009 -
Stsc121133g00003 656 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 25 313 - -
Stsc121133g00003 656 Gene3D Transferase(Phosphotransferase) domain 1 22 342 - -
Stsc121133g00003 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Stsc121133g00003 656 Pfam Protein phosphatase 2C 394 639 IPR001932 -
Stsc121133g00003 656 SMART PP2C_SIG_2 404 646 IPR001932 -
Stsc121133g00003 656 SUPERFAMILY PP2C-like 378 648 IPR036457 -
Stsc121133g00003 656 Pfam Protein kinase domain 31 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121133g00003 656 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 380 650 - -
Stsc121133g00003 656 SMART serkin_6 30 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121133g00003 656 SMART PP2C_4 379 644 IPR001932 -
Stsc121133g00003 656 FunFam Protein kinase and PP2C-like domain-containing protein 20 343 - -
Stsc121133g00003 656 CDD PP2Cc 391 646 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121133g00003 Stsc-Chr121133 18010 26165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121133g00003 99 656 PP2C-type Phosphatase Gene Family AT2G40860 64.831 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Stsc121133g00003 Pkinase 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121133g00003 - - vun:114166829 1083.55