Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121133g00001 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTAAGGAAAGGACTCTGGTCCCCAGAGGAAGATGAGAAGCTTCTCAATTATATCACCAACCATGGTCATGGATGTTGGAGCTCTGTCCCCAAACTAGCAGGATTGCAGAGATGTGGGAAGAGCTGCAGATTAAGATGGATTAATTACCTGAGGCCTGACTTGAAGAGAGGAGCATTCTCTCAGGAAGAAGAGGATTTGATCATTGAACTCCATGCAGTTCTTGGAAACAGGTGGTCTCAGATTGCGGCCAAGTTACCGGGAAGAACCGACAATGAGATAAAGAATCTATGGAACTCTTGCCTCAAGAAGAAGCTCAGGCAAAGAGGGATTGATCCAAACACAAACAAGCCACTCTCCGAAGTGATGATGACCATAGAGAATGACATGAACAAAAAGAAGAAGAAGGAAGAGGAGAAAGAAGAAGAAGAGAAAAAACCACCACCACCAACAACCACCACTACTAATACTGGATCCAATAACAATGAAGCAACAACAACAATTGAAAGGCCTCCTCCTTCTGATTCTGCTGCAGGAGGCTATTTTTCTTTCAATAATTATCAGCACATGATGAATTTTGGACCAAGCATGGTGCCATATTTCCCTCCTCCTCCTCCTCCACCGAACACCGCATCCTCCGGTGAAGTTGTTGATCATAATATCTTTCAAAGTAACATTAACAACATTCTAACATGGGAACATGTAGAGCCAGAACATCAAGAAGAGGTAAAATGGTGTGAGTATCTTAACACCCCTTTTCTCATGGCAAACAACAACAACAACAACGTAGTTCAAAACTCTTCATCTACTTCTTGTTCTTCTTCTACTTCTAATTCTCATTCTGTTATGTATGGTGGTGGTGGTGGTGAGGTTATTAAGCCAGAAACAAGCTTCTTCATGAGACAAGACTCATCAAGTAGTAGTTATTGGAACCAACAACCTCATCATCAATTATTCTCAGATATGTATACCAAGGATCTCCAGAGATTTTCACTGGCTTTTGGCCAATCCATGTAA 1047 0.4202 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAKLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTNKPLSEVMMTIENDMNKKKKKEEEKEEEEKKPPPPTTTTTNTGSNNNEATTTIERPPPSDSAAGGYFSFNNYQHMMNFGPSMVPYFPPPPPPPNTASSGEVVDHNIFQSNINNILTWEHVEPEHQEEVKWCEYLNTPFLMANNNNNNVVQNSSSTSCSSSTSNSHSVMYGGGGGEVIKPETSFFMRQDSSSSSYWNQQPHHQLFSDMYTKDLQRFSLAFGQSM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121133g00001 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc121133g00001 348 SMART sant 66 114 IPR001005 -
Stsc121133g00001 348 SMART sant 13 63 IPR001005 -
Stsc121133g00001 348 Gene3D - 11 67 - -
Stsc121133g00001 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc121133g00001 348 FunFam Myb transcription factor 11 67 - -
Stsc121133g00001 348 MobiDBLite consensus disorder prediction 119 190 - -
Stsc121133g00001 348 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc121133g00001 348 Coils Coil 133 156 - -
Stsc121133g00001 348 CDD SANT 17 61 IPR001005 -
Stsc121133g00001 348 MobiDBLite consensus disorder prediction 137 158 - -
Stsc121133g00001 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc121133g00001 348 PANTHER MYB DOMAIN PROTEIN 55 1 309 - -
Stsc121133g00001 348 MobiDBLite consensus disorder prediction 159 182 - -
Stsc121133g00001 348 FunFam MYB transcription factor 68 144 - -
Stsc121133g00001 348 CDD SANT 69 109 IPR001005 -
Stsc121133g00001 348 Gene3D - 69 116 - -
Stsc121133g00001 348 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc121133g00001 348 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc121133g00001 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121133g00001 Stsc-Chr121133 4261 5615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121133g00001 1 348 MYB Transcription Factor Family AT1G09540 45.297 1.64e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121133g00001 Myb_DNA-binding 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121133g00001 K09422 - twl:120011454 294.278