Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121132g00001 ATGAATTCTCCAACTTCACACTTTGTTCCCCCAAGAAGGATGGGAGTATATGATCCAATCCACCAGATTAGTATGTGGGAAGAAAATTTCAGAAATAATGTTAATTTAAGTGCATCAACGCTCTTAATTGATGATGCAGAGATAAAGTTTGACAATCAGTCAGAATATGCTTCTCATGGAATACCAGGAACTTCTAAACAATATGACCAAGAAGCTAACAGACTTGCTGATAAGATACAACGACGTCTTGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGTTTGCGCAAAAAGGCCTATGTGCAGCAGTTAGAATCATGTCGTGTGAAGCTAATGCAGTTAGAGCAAGAGGTTGATCATGCAAAACAAAAGGGATTACATATTGGTGGTACTGGATTGGGTTCTAATAGTTTGGATTTTGCTGCCTCTATAAATTCAGGAATAACAAGCTTTGAGATGGAGTATGGACATTGGCTAGAAGAGCGGAATAGACTAACCATGGCACTTAGAAATGCTTTAAATTCTCATGTCAGTGACATAGAACTCGGCGAAATTGTAGATGGCACGATGAACCACTATTTCAAACTCTTTGGCATGAAATCTGGCGCAGCAAAAGCTGATGCTTTCTATGTTATGTCCGGCATGTGGAAATCATCAGCTGAACGATTTTTCTTCTGGATTGGAGGCTTTCGCCCCTCAGAAATTCTAAAGATTCTGGTCCCTAGGATTGAAACCATGACAGAGCAACAAAGGTCAGACATAAGCAACCTTGGAAAATCATGTCAGCAAGCAGAAGATGCTCTTTCACAAGGCATGGACAAACTCCAACAAATGGTTTCAGAATCTGTAGCAGCAGGACAACTTGAAGAACAAACTGACACTCCACACATGTCTACTGCAATGGAGAGGTTGGCAGCTCTAGTGAGCTTTGTAAACCAGGCTGATCATCTACGACAGGAAACCTTGCTGCAGATGTCTCGAATACTCACAAAACGGCAGGCTGCAAGGTGGCTTCTTGCTTTGGGGGAATATTTTCAAAGCCTGCAAGCTTTGAGCTCTTTCTGGGCTAATCGTCCTCCCAAACCTGCTTAA 1092 0.4222 MNSPTSHFVPPRRMGVYDPIHQISMWEENFRNNVNLSASTLLIDDAEIKFDNQSEYASHGIPGTSKQYDQEANRLADKIQRRLAQNREAARKSRLRKKAYVQQLESCRVKLMQLEQEVDHAKQKGLHIGGTGLGSNSLDFAASINSGITSFEMEYGHWLEERNRLTMALRNALNSHVSDIELGEIVDGTMNHYFKLFGMKSGAAKADAFYVMSGMWKSSAERFFFWIGGFRPSEILKILVPRIETMTEQQRSDISNLGKSCQQAEDALSQGMDKLQQMVSESVAAGQLEEQTDTPHMSTAMERLAALVSFVNQADHLRQETLLQMSRILTKRQAARWLLALGEYFQSLQALSSFWANRPPKPA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121132g00001 363 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Stsc121132g00001 363 Pfam Seed dormancy control 168 240 IPR025422 GO:0006351|GO:0043565
Stsc121132g00001 363 Gene3D - 76 126 - -
Stsc121132g00001 363 PANTHER TRANSCRIPTION FACTOR TGA9 3 359 - -
Stsc121132g00001 363 FunFam BZIP family transcription factor 77 126 - -
Stsc121132g00001 363 Coils Coil 97 124 - -
Stsc121132g00001 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Stsc121132g00001 363 SUPERFAMILY Leucine zipper domain 78 113 IPR046347 GO:0003700|GO:0006355
Stsc121132g00001 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121132g00001 Stsc-Chr121132 2793 6880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121132g00001 1 363 Calmodulin-binding Proteins AT5G10030 62.740 1.53e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc121132g00001 DOG1 5.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121132g00001 K14431 - gmx:100793353 511.916