Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121131g00001 ATGAGTAGCAATAATGGACATAGTTATGGCAAGCTCTTTGAAGGGCAAGCTCAGTTATACAAACTCCTATTTAGCTTCCTCACTCCAATGTGTCTCAAGTGGGCTACTGAGTTAAACATACCAACCATAATTCACAAACATGGCAAACCAATTACACTTTTTCACTTACTCTCAGCCCTCAATCTTCCACCCTCTAAAAACTGGGTGGTGCCGCGCCTCATGCGCCTTCTAGCGCACAATGGACTCTTCGCCATTGTAAGACTTCAAGAAAATGGAGAAGAACAAGAAAAGGAAGCATACACTCTAACCCCGGCGTCAGAGCTTCTTGTTGAAGGAAGTAGCCATTGCTTATCTGCAATTGTTAAGGATACTCCTGATTACAATACGTTTGGTGCAGCCCTTAGAATGGGAGATTGGATCCGTGGCGAAGATCGCTCGATATTTGATACTGCCTTTGGGGTTAGCTTTTGGGATTTGACTCATAAAAATCCTGAGAAGTTCGTTGCCTTCAATGAGTCCATGGCAAGTGATTCTCAAATGGTGAACTTGGCACTGAGAGATTGCAAATCAGTGTTTGAAGGGATAGAATCTGTTGTGGATGTTGGTGGTGGAAATGGAGCCACTGGAAAAATCATCTGTGAGGCATTTCCTGAGTTGAAATACACTGTGTTTGACCTTCCACCAGTTGTTGCTAATTTGAACAGAATTGGTAACTTGAGTTATGTTGGTGGTGACATGTTTGTATCTATTCCTCAAGCTGATGCAGTCTTATTAAAGTGGGTTTTACACGATTGGAATGATGAAGATTGCATAAAAATTCTAAAAAATTGCAAAAAGTCTATTTCGGAAAAAGGAAAAGTGATTATTATTGATGTAGTAATAGATGACGAAGAGCAAGAGGAAGATGAAATGACACCAACAAAACTTCTTTTTGATGTAGAAATGGCAGTTGTTTTTGGTGCAAAAGAACGGAGTAAAAAAGAATGGAAACAACTCACCAAAGAAGCTGGTTTCAACAATTATAAAATATCTCCTATATTTGGTTTTAGATCTCTCATTGAAGTCTATCCTTAA 1074 0.3948 MSSNNGHSYGKLFEGQAQLYKLLFSFLTPMCLKWATELNIPTIIHKHGKPITLFHLLSALNLPPSKNWVVPRLMRLLAHNGLFAIVRLQENGEEQEKEAYTLTPASELLVEGSSHCLSAIVKDTPDYNTFGAALRMGDWIRGEDRSIFDTAFGVSFWDLTHKNPEKFVAFNESMASDSQMVNLALRDCKSVFEGIESVVDVGGGNGATGKIICEAFPELKYTVFDLPPVVANLNRIGNLSYVGGDMFVSIPQADAVLLKWVLHDWNDEDCIKILKNCKKSISEKGKVIIIDVVIDDEEQEEDEMTPTKLLFDVEMAVVFGAKERSKKEWKQLTKEAGFNNYKISPIFGFRSLIEVYP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121131g00001 357 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
Stsc121131g00001 357 FunFam Coniferyl alcohol 9-O-methyltransferase 2 109 - -
Stsc121131g00001 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 356 IPR029063 -
Stsc121131g00001 357 Gene3D Vaccinia Virus protein VP39 111 357 IPR029063 -
Stsc121131g00001 357 Pfam O-methyltransferase domain 136 339 IPR001077 GO:0008171
Stsc121131g00001 357 PANTHER O-METHYLTRANSFERASE 19 342 IPR016461 GO:0008168
Stsc121131g00001 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Stsc121131g00001 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Stsc121131g00001 357 Gene3D - 1 109 IPR036388 -
Stsc121131g00001 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 357 IPR016461 GO:0008168
Stsc121131g00001 357 CDD AdoMet_MTases 198 286 - -
Stsc121131g00001 357 FunFam O-methyltransferase ZRP4 111 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121131g00001 Stsc-Chr121131 2558 4344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121131g00001 11 343 Monolignol Biosynthesis Gene Families AT5G54160 32.849 1.07e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121131g00001 K22588 K13262 gmx:100818724 396.356