Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121128g00009 ATGTTAATCTCTCACCGTTACAAACCCCTTCTCTATCAAACCCTAAATCTTGTATTCCGAAGAACACCACCACTCATGTTCTGCACTTCACAATCACACTCTTCCACTGTTTCATACCTCATCAATAATCTTGGTTTCACCCCACAAGCTGCTCTAACTCTAGCCTCCGCAAAATGGTTTCGTTTCAGTACCCCACAGAAGGCAGACACAGTCCTCGCATTCTTCAAAACCCATGGATTCTCCAATTCCCAAATTGCTACCCTTGTTACCAAGCTACCTGCAATACTTTCATCCAATCCACAAAGGATCCTCCTAAAGTTTCAATTTTTAGCCTCCAAAGGTGCTTCCCCCCATCACATTGCTCTTCTAGCAACTAGGTACCCTAAATTCTTGCATTTGAGCCTCCACAACCACATTATCCCTACTTATGGATTGCTGAAAACATTCTTTCAATCCGATGAGAAAACGCTCAGCTCCATTGTTTCTTGCCCTGCTTCCTTCATGGACTCTCGCTTGCCGAAAAATACCAAGTTGTTGGCTGATGCCGGAGTCTCTAACTCTGCTATCGGCTATTTGATTCGTGTCAGAGTGGGTGTTCTCATATGCTCTGGCTTGACGAAGACTGTGGATGAAGTAAAGAAATTAGGGATTGATCCTTCACAGGTTAAGTTTGCTATAGCTTTGCAAGCCAAAAAGACTGTAAAGAAAGCACTGTGGGATGCCAAAGTTGATGTCTTGAAGAGCTGGGGTTGGTCTGAAGAAACACTGTCTGAAGCATTCAGGAGGAGCCCTTTATATATGCTATCATCTAAGGATAAGATTAATAAGGTGATGAAACTTTGGGTCAATCAATTAGGTTGGGATCCTTTGGTTCTTGCCAAGATGCCATGGCTTTTTGGATATAATTTGGAGACAAGAATCATTCCCAGGGCTTTTGTTCTCCAGCATTTACTTGAAAAAGGTTTGATAAACAACAACGATGTCCGGGCTCTGCCATTCTGTGTTTCGGAAGACATGTTCCTTAACAAGTTTGTGGAATGTTTTACAAAGGAAAAGTCTCAACTACTGAAGATATACCATGAGAAAAAAAAAACATGTTCATGA 1104 0.4194 MLISHRYKPLLYQTLNLVFRRTPPLMFCTSQSHSSTVSYLINNLGFTPQAALTLASAKWFRFSTPQKADTVLAFFKTHGFSNSQIATLVTKLPAILSSNPQRILLKFQFLASKGASPHHIALLATRYPKFLHLSLHNHIIPTYGLLKTFFQSDEKTLSSIVSCPASFMDSRLPKNTKLLADAGVSNSAIGYLIRVRVGVLICSGLTKTVDEVKKLGIDPSQVKFAIALQAKKTVKKALWDAKVDVLKSWGWSEETLSEAFRRSPLYMLSSKDKINKVMKLWVNQLGWDPLVLAKMPWLFGYNLETRIIPRAFVLQHLLEKGLINNNDVRALPFCVSEDMFLNKFVECFTKEKSQLLKIYHEKKKTCS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121128g00009 367 Gene3D Transcription termination factor 3, mitochondrial 168 357 IPR038538 -
Stsc121128g00009 367 PANTHER CGI-12 PROTEIN-RELATED 32 348 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 50 81 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 190 218 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 16 47 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 257 288 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 86 116 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 289 323 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 SMART mt_12 121 153 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 Pfam mTERF 72 278 IPR003690 GO:0003690|GO:0006355
Stsc121128g00009 367 FunFam Mitochondrial transcription termination factor-like 135 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121128g00009 Stsc-Chr121128 55549 56652 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc121128g00009 mTERF 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121128g00009 K15031 - gmx:102666739 331.643