Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121128g00005 ATGAAGAAAGCACAAGTCTGTGAAGGTAGCAGTAAGGCCACAGGACCCACCACCACCACAAGCCGATACGGAAAGCGGCCATTTGTTGTCGTAGAAGAAGAAGATGAACAACTTGATGATGTTGCTGATGCTAATAACAATGAACTAGTCACAGTCAATGAAGCCGGTAAGAAAGGTCCTTCTGTTGAAGACAACTCCTTTACTGTCTTCCTTTCAGACCCAGATATTCTTCATTGTCCCATTTGCTTTCATCCCTTCACCAATGTAATCTATCAGTGTAAAAATGGTCATGTTTCTTGCTCTGATTGCTGTAAAAAGCTTAAGAAGAAATGTGCTACATGCTCGTCGTCAATAGGTTCAATCCGTAACAGGGCATTGGAGAAAGTATTGGAATCCATTAAATTTCCATGCCCTAATGCAAAACACGGTTGCAATGTTACATTTAGTCACATTGGCAAGTGTTGGCATGGATCCAAATGCCACTTTGTGCCATGTAACTGTCCACACAAAGATTGTGAATTTGTTTCCTCAATCTTTGATCTACCCGTCCACTTCAGAACTGAACATGGTTCCTCCAGTGTAGTTAGGTTTCAGTATTTGAAACCGTTTGATGTCACATTGAATTCTGAAGATGAAGCCACTATACTTCAAGCAGAGAGTGATGGCAGGTTTTTCATACTTTAG 684 0.4108 MKKAQVCEGSSKATGPTTTTSRYGKRPFVVVEEEDEQLDDVADANNNELVTVNEAGKKGPSVEDNSFTVFLSDPDILHCPICFHPFTNVIYQCKNGHVSCSDCCKKLKKKCATCSSSIGSIRNRALEKVLESIKFPCPNAKHGCNVTFSHIGKCWHGSKCHFVPCNCPHKDCEFVSSIFDLPVHFRTEHGSSSVVRFQYLKPFDVTLNSEDEATILQAESDGRFFIL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121128g00005 227 MobiDBLite consensus disorder prediction 1 26 - -
Stsc121128g00005 227 SUPERFAMILY TRAF domain-like 132 226 - -
Stsc121128g00005 227 Pfam Seven in absentia protein family 121 202 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc121128g00005 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 185 IPR013083 -
Stsc121128g00005 227 ProSiteProfiles Zinc finger SIAH-type profile. 132 190 IPR013010 GO:0008270
Stsc121128g00005 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 25 227 IPR044286 -
Stsc121128g00005 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 131 IPR013083 -
Stsc121128g00005 227 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121128g00005 Stsc-Chr121128 30666 32134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121128g00005 75 189 C3H Transcription Factor Family AT2G41980 35.897 1.93e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121128g00005 K04506 - pvy:116111216 158.688