Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121128g00004 ATGAAGAAAGCACAAGTCTGTGAAGGTAGCAGTAAGGCCACAGGACCCACCACCACCACAAGCCGATACGGAAAGCGGCCATTTGTTGTCGTAGAAGAAGAAGATGAACAACTTGATGATGTTGCTGATGCTAATAACAATGAACTAGTCACAGTCAATGAAGCCGGTAAGAAAGGTCCTTCTGTTGAAGACAACTCCTTTACTGTCTTCCTTTCAGACCCAGATATTCTTCATTGTCCCATTTGCTTTCATCCCTTCACCAATGTAATCTATCAGTGTGAAAATGGTCATGTTGCTTGCTCTGTTTGCTGTGTCAATCTTGGGAACAAATGTGCCTCATGCTCGTTGCCAATAGGTTCAATCCGTAACAGAGCATTGGAGAAAGTATTGGAATCCATTAAATTGCCATGCCCTAATGCAAAACACGGCTGCAATGATACATTGCTTTACAGTGAGAAGTGTGGCCATGAATCCAAATGCTTCTTTGTGCCATGTACCTGTCCACACAAAGATTGTGAATTTGTTTCCTCAGTCTTTGATCTACCCGCCCACTTCAGAAGTGAACATGGTTCCTCCACTGTAGTGAGGTTTTTGTATTCTGAACCATTCAATATCACATTGAAGGCTGAAGATGAAGACACTATACTTCAAGCAGAGAGTGATGGCAAGTTGTTCATACTGCAGAATCTTGTGACCAGTCTTGGAAATGCTGTTAATGTTTTTTGTATTCAGCCTGATTCAATGGCTATCTATCAGTGCGAAATTTCGGCTATGTCAAATGGATGCAGTCTGGGGATTAAGTATCATGCCAAGAACATTCAGAAGTTTACTGTTAGCACTGATCTTTCATCAAGGTTCCTGGTTATTCCATCTGGTTATTTTGGTGCTAGTGAGCCTTTCAACCTGGAAATTCGCATACTTTATTTAGAAGCATGGAAGATAATTTGTTGCTAG 954 0.414 MKKAQVCEGSSKATGPTTTTSRYGKRPFVVVEEEDEQLDDVADANNNELVTVNEAGKKGPSVEDNSFTVFLSDPDILHCPICFHPFTNVIYQCENGHVACSVCCVNLGNKCASCSLPIGSIRNRALEKVLESIKLPCPNAKHGCNDTLLYSEKCGHESKCFFVPCTCPHKDCEFVSSVFDLPAHFRSEHGSSTVVRFLYSEPFNITLKAEDEDTILQAESDGKLFILQNLVTSLGNAVNVFCIQPDSMAIYQCEISAMSNGCSLGIKYHAKNIQKFTVSTDLSSRFLVIPSGYFGASEPFNLEIRILYLEAWKIICC 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121128g00004 317 MobiDBLite consensus disorder prediction 1 26 - -
Stsc121128g00004 317 SUPERFAMILY TRAF domain-like 132 295 - -
Stsc121128g00004 317 ProSiteProfiles Zinc finger SIAH-type profile. 132 190 IPR013010 GO:0008270
Stsc121128g00004 317 MobiDBLite consensus disorder prediction 10 24 - -
Stsc121128g00004 317 Pfam Seven in absentia protein family 121 192 IPR018121 GO:0005737|GO:0006511|GO:0007275
Stsc121128g00004 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 185 IPR013083 -
Stsc121128g00004 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 25 307 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121128g00004 Stsc-Chr121128 30666 43982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121128g00004 75 306 C3H Transcription Factor Family AT2G41980 29.297 2.24e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121128g00004 K04506 - cave:132183012 230.72