Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121126g00002 ATGAAGATCGCGAGCTTCTTGACGCCAAAGTCTGGACAAGTAGGATTCGGGAAGGGTTGGGCTCGGGGCGGGTGGGTCGGTTTGGGTCCGGATAGAGAATTCTGCGCCTGCCTCCTCCCTCAAAACCGTGAGTCCTCAGCAACACACTCTCCTCCGGCCTCCGCTACTTTTGTTCTAGAAAGAAAGATGCAGAACGAGGAGGGGCAGATCACTGAGCTCTACATTCCTAGGAAGTGCTCTGCAACAAACAGGTTGATAACCTCAAAGGACCATGCGTCGGTGCAGATCAACATTGGTCACTTGGATGAGAGTGGTCAATACAATGGCACCTTCTCCACATTCGCCCTCTGCGGCTTCATTCGTGCTCAGGGTGATGCCGACAGTGCACTAGATCGCTTGTGGCAAAAGAAGAAAGCTGAGAAGCAGCAGCAGTAG 435 0.531 MKIASFLTPKSGQVGFGKGWARGGWVGLGPDREFCACLLPQNRESSATHSPPASATFVLERKMQNEEGQITELYIPRKCSATNRLITSKDHASVQINIGHLDESGQYNGTFSTFALCGFIRAQGDADSALDRLWQKKKAEKQQQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121126g00002 144 ProSitePatterns Ribosomal protein S21e signature. 73 81 IPR018279 GO:0003735|GO:0005840|GO:0006412
Stsc121126g00002 144 Gene3D - 59 143 IPR038579 -
Stsc121126g00002 144 Pfam Ribosomal protein S21e 63 139 IPR001931 GO:0003735|GO:0005840|GO:0006412
Stsc121126g00002 144 PANTHER 40S RIBOSOMAL PROTEIN S21 63 140 IPR001931 GO:0003735|GO:0005840|GO:0006412
Stsc121126g00002 144 FunFam 40S ribosomal protein S21 63 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121126g00002 Stsc-Chr121126 6502 7997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121126g00002 63 143 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 82.716 1.59e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121126g00002 K02971 - qsa:O6P43_021738 155.221