Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121122g00011 ATGATGGCGAAAGCATCATCATCTTCATTGACATGGGATTGGACTTACGATGTTTTCCTGAGTTTCAGAGGACAAGATACTCGCAACGGTTTCACCGGTAATCTATACCATGCTCTCGATCAAAGGGGTATCCACACCTTCATTGATGATGAAGAGCTTCAAAAGGGTGAAGAAATCACTCCAACACTTCTCAAGGCCATTCAAGAATCTAGGATTGCCATCATTGTCTTCTCTAAGAACTATGCATCCTCTACTTTCTGTTTGGACGAGCTTGCAAAGATCCTTGAGCTCTTGAAACTTGAAGGCCGATTGGTTTGGCCAATCTTTTATGATGTGGATCCATCGGATATTCGCCATCAGAAGGGTAGTTATGGAGAGGCATTAGCAAAACATGAAGAAAGGTTCCAACATGACAATGGCAAGATACGAAAATGGAGGAATGCTCTACGTGAAGCAGCTAATTTATCCGGCTCACACTTCAAACTAGGGTCTCAACAGGAATACAAGTTTATTGAAAACATTGTTGATGACATCTCCAAAAAGCTGAGTTATACTCCTTTACATGTTGCTGACAACCCGGTTGGGCTGGAGTCACCGGTGCTAGAAGTGAAGTCTCTGCTACGAGTTGGGTCTAATAAGGATGATGAAGATGGTGTTCACATGGTTGGGATTTGTGGAAGTGGGGGAATAGGTAAAACAACACTTGCAAGAGCTGTGTATAACTCTGTTGCTGATCAATTTGATGGTTTGTGTTTTCTTGCTGATGTTAGAGAAAATGCAATCCATAAGAATGGCCTTGCACAACTCCAAGAGACACTCCTTTCTGAAGTTCTTGATGAGAGTAACATAAGAATAAGAGATGTCAACAGAGGGATTCCAATGATAAAAAGGAGGCTTCAACAGAAGAAGATTCTTTTGATTCTTGATGATGTGGATGACTTGTCACAGTTAAGGGCTATTGCTGGAGGTGATGATTGGTTTGGTTCTGGTAGTCGAATCATTATCACTTCTAGAGACAAACACTTGCTAGAAGCACAATATGGGATGAATCCGAACATGATTTATGAGGTCAAAGAGTTAGACAAAAAAGAAGCTCTTGAATTGTTCTGTTGGAAGGCCTTTAGAAGCAACAAAGTAAAGTCAGGTTATGAAGAGATTTCGAACCGTGTTCTTTCTTATGCCGGTGGAGTTCCTCTGGCTTTGGAAATAATAGGTTCTAACCTGTATAACAAGAGCATAGATCAATGGAGCTCTGCATTAGAAAAATACAAGAAAATTCCTATTAAGAAGATTCAAGATGTACTTGAGGTAAGTTATGATGGATTACATGAGGATGAGAAGAGTATTTTTCTTGACATAGCTTGTTTCTTCAAGAAGGAAAAGATATCATATATGAAGCAAATGCTACATGTCCGTGGTTTCCACCCTGAAGATGGTATTGATGTTCTGATTGACAGATCTTTGATGAAGATTGATAAAAATAATAATTGTGTGAGAATGCATGATCTGATTCAAGATATGGGTAGAGAAATTGTTAGAAGGGAATCAGCTTCTAAGCCTGGCAAACGTTCTAGACTGTGGAATGATGAGGACATTATTCATGTTTTAGAAAATGACATGGGAACAGATAGAGTTGAAGTCATAATTTTGCACTCAAGCAAGCATAGAGTGAATTGGAGTGGAAAAGCATTCAAGAAAATGAGGAATCTCAAAGTTCTCATATTTTGGGATAGTTTCAATTCCTTGAGTTACATGGATTTTGGAGAATGTGAGTTCTTGACACAAGTACCTGATCTTTCAGGAGTCCCAAATTTAGGGGCACTGTGTCTTGATAACTGCAGAAACTTAGTTAAAGTGGACAACTCAGTTGGATTTCTGGAGAAACTGATTTTGCTTAGTGCTCAACGATGCACCAATCTCCTCACTCTTGTAGACGAAATCAATCTTCCATCTCTTGAGACTCTGGACCTCAGTGGCTGCACAAGCCTCGTGTGCTTCCCTGAAATCGTAGCAAAGATGGAAAACATTAGAGCAATTTACTTAGACAGCACCGCCATAGACGATCTGCCACTCACCATGTTCAATCTCGTTAGCCTGGAGCGATTGTACATCAGGAACTGCACAGATCTGAAAACGCTTCAAGGTTGCGTCCGCTTGCTACCGAAGCTCGAGGTCGTGATTTTTCCAAATCAAAGAGGATTTCGATTGAATTCCGTCATCCACGGATTTCAACAAGAGATCTCATCAAAGTTCATGATTCACCGCGGTCCTCGTCCTCTGGTTCCGCTTTGGGAAGCTTATTGCACAGTCTCCTCCGATCTGAATCTCATCCGATTATATTATCCTCACCGCCGTGTTTCGCCGGCAGGAGAATCCAGCGGCGGATCTGAAGGTGCGTCGTGCGTGAGCTTTTGGTACCGGAGAAGACTCCCGGGGGTAATCAGTGTATTGTTCACGACTGAAACAACTGACATTGACGCCATTGGCTCTGTTCTTGAATTTAGGGTTTTAGCGTTGGTGAATCGCAGTTACATGTTCTCTTCGTCGAGTGTTTACGTAATCTCTGAGACAAGAACGAGACAGCCGTTACTCGTGAACGTGATTCTCGGAACACTTAAAGGCCACAGCGAGAGATTTTTTTTCAGATCGGAGTCGGAGAATGTATGGAACCTGGTGCAGATTGTTGGCGAGATGTATTTTCACAGGCCGTGTACGGAGGAGGAGGGGAAGAGGACGGCGGTGGGAGCAGTTATGAAACGGAGTAGTGTTCGTTTTGACAGGGAATATTGCTGCATGGAGGATATACGATATGTGAATGATGAGTGTGATGAGGAAAGGGGAGGATCAGGTGAATGTGATGGTTGTTGCTATGGTCCTGAGTCACCGAAATCATGCATTATGCGTGATCCTGGGGAGGATGATAAGGCAGCAACTGGTGTTGATCGTAATTTGATTAAAGTTAGCTTGCCAAATATGTTATGGTTCATGGGCTGTATGGAACCTTTTAACCGCCAATAA 3018 0.4225 MMAKASSSSLTWDWTYDVFLSFRGQDTRNGFTGNLYHALDQRGIHTFIDDEELQKGEEITPTLLKAIQESRIAIIVFSKNYASSTFCLDELAKILELLKLEGRLVWPIFYDVDPSDIRHQKGSYGEALAKHEERFQHDNGKIRKWRNALREAANLSGSHFKLGSQQEYKFIENIVDDISKKLSYTPLHVADNPVGLESPVLEVKSLLRVGSNKDDEDGVHMVGICGSGGIGKTTLARAVYNSVADQFDGLCFLADVRENAIHKNGLAQLQETLLSEVLDESNIRIRDVNRGIPMIKRRLQQKKILLILDDVDDLSQLRAIAGGDDWFGSGSRIIITSRDKHLLEAQYGMNPNMIYEVKELDKKEALELFCWKAFRSNKVKSGYEEISNRVLSYAGGVPLALEIIGSNLYNKSIDQWSSALEKYKKIPIKKIQDVLEVSYDGLHEDEKSIFLDIACFFKKEKISYMKQMLHVRGFHPEDGIDVLIDRSLMKIDKNNNCVRMHDLIQDMGREIVRRESASKPGKRSRLWNDEDIIHVLENDMGTDRVEVIILHSSKHRVNWSGKAFKKMRNLKVLIFWDSFNSLSYMDFGECEFLTQVPDLSGVPNLGALCLDNCRNLVKVDNSVGFLEKLILLSAQRCTNLLTLVDEINLPSLETLDLSGCTSLVCFPEIVAKMENIRAIYLDSTAIDDLPLTMFNLVSLERLYIRNCTDLKTLQGCVRLLPKLEVVIFPNQRGFRLNSVIHGFQQEISSKFMIHRGPRPLVPLWEAYCTVSSDLNLIRLYYPHRRVSPAGESSGGSEGASCVSFWYRRRLPGVISVLFTTETTDIDAIGSVLEFRVLALVNRSYMFSSSSVYVISETRTRQPLLVNVILGTLKGHSERFFFRSESENVWNLVQIVGEMYFHRPCTEEEGKRTAVGAVMKRSSVRFDREYCCMEDIRYVNDECDEERGGSGECDGCCYGPESPKSCIMRDPGEDDKAATGVDRNLIKVSLPNMLWFMGCMEPFNRQ 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121122g00011 1005 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Stsc121122g00011 1005 Pfam TIR domain 16 185 IPR000157 GO:0007165
Stsc121122g00011 1005 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 184 - -
Stsc121122g00011 1005 Pfam NB-ARC domain 215 435 IPR002182 GO:0043531
Stsc121122g00011 1005 Gene3D Ribonuclease Inhibitor 545 738 IPR032675 -
Stsc121122g00011 1005 Gene3D - 11 187 IPR035897 -
Stsc121122g00011 1005 Gene3D - 359 443 IPR042197 -
Stsc121122g00011 1005 SMART till_3 15 155 IPR000157 GO:0007165
Stsc121122g00011 1005 Gene3D - 188 349 IPR027417 -
Stsc121122g00011 1005 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
Stsc121122g00011 1005 SUPERFAMILY L domain-like 499 731 - -
Stsc121122g00011 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 453 IPR027417 -
Stsc121122g00011 1005 PRINTS Disease resistance protein signature 647 663 - -
Stsc121122g00011 1005 PRINTS Disease resistance protein signature 298 312 - -
Stsc121122g00011 1005 PRINTS Disease resistance protein signature 221 236 - -
Stsc121122g00011 1005 PRINTS Disease resistance protein signature 394 408 - -
Stsc121122g00011 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 714 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121122g00011 Stsc-Chr121122 52151 56316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121122g00011 16 726 WRKY Transcription Factor Family AT4G12020 29.847 2.24e-69 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121122g00011 - - ahf:112736348 1029.62