Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121118g00007 ATGTCTTCAAACAATGGGGAGAAAGCAAATGAGATCTTCAAAGCTCAAGCTCTTGTTTACAGGAACATGTATGGCCACCTTGACTCCATGTGTCTCAAGTGGATCATTGACTTTGGCATACCAAACATAATCCACAACCATGGCAAGCCCATTACTCTTTCAGAATTGGTCTCTACTCTGAATATTCCATCTGCCAAAGTTGAAAGTGTGGATCTTTTCATGCGCTACAGGGCGCATAATGGATTCTTTGATATAGTAAGAATCATTGATGACGACAATGATGATGGCGAGGAAGAAAAAGAAAAGGAAGCATTTGCTCTGACAACAGCATCAGAGCTCTTAATTAAAGGAAGTGAAAACCCTTGTATATCTCCAGTGGTTGAGTTAGTTACTGATCCAACTCTTTCATCTTCGTTCTATCATATAAACAAGTGGTTTTACGACGAAAATCGCACTCTATTCGAAATCGCCTTGGGGAAACCTGTGTGGGAGTTTCTTGATAAGAACCCTACACACATGAGCTTGTTCAACGAAGCTATGGCCAGTGATTCTCAGATGGTGAAGTTGGCACTGAAGGATCACAACATCAACATGGCCTTTCAGGGCTTGGAATCAATGGTGGATGTTGGTGGTGGGACGGGAACCACAGCTCAAATTATCAGTGAACATTTCCCAAAACTCAAATTTGTAGTATTTGATCTTCCACATGTTGTGAAAGGTCTGAAGGCATCCAACAATTTGAGCTTTCTTGGTGGAGACATGTTCGAATCCATTCCTAAGGCTGACGCAATTCTTCTTAAGCTAGTCTTACATAATTGGAGCGACGACAATTGCATAAAAATATTGAAAAACTGCAAAGATGCAATAGTCAACGTATTGAGAGACGATAAAAAAGGCAAAATAATGATATTAGATATTGTTGTAAATGAAGAACAAGATGAACCGGAAATTATTACTCGGGTCAAATTTCTTATGAATATAAGTATGCATGTTCTTCTCCACGGAAAAGTGAGAACCAAAGAAGAATGGAAAAATATCTTTGATGAAGCTGGCCTCTGTGACTACAAGATATCTCCTTTTTCCGGATATTTATCACTTATTGAGGTTTACCCCTAA 1116 0.3925 MSSNNGEKANEIFKAQALVYRNMYGHLDSMCLKWIIDFGIPNIIHNHGKPITLSELVSTLNIPSAKVESVDLFMRYRAHNGFFDIVRIIDDDNDDGEEEKEKEAFALTTASELLIKGSENPCISPVVELVTDPTLSSSFYHINKWFYDENRTLFEIALGKPVWEFLDKNPTHMSLFNEAMASDSQMVKLALKDHNINMAFQGLESMVDVGGGTGTTAQIISEHFPKLKFVVFDLPHVVKGLKASNNLSFLGGDMFESIPKADAILLKLVLHNWSDDNCIKILKNCKDAIVNVLRDDKKGKIMILDIVVNEEQDEPEIITRVKFLMNISMHVLLHGKVRTKEEWKNIFDEAGLCDYKISPFSGYLSLIEVYP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121118g00007 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 370 IPR029063 -
Stsc121118g00007 371 PIRSF O-mtase 1 371 IPR016461 GO:0008168
Stsc121118g00007 371 FunFam O-methyltransferase ZRP4 117 371 - -
Stsc121118g00007 371 Pfam O-methyltransferase domain 139 351 IPR001077 GO:0008171
Stsc121118g00007 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 371 IPR016461 GO:0008168
Stsc121118g00007 371 SUPERFAMILY "Winged helix" DNA-binding domain 9 118 IPR036390 -
Stsc121118g00007 371 PANTHER O-METHYLTRANSFERASE 14 356 IPR016461 GO:0008168
Stsc121118g00007 371 Gene3D - 1 114 IPR036388 -
Stsc121118g00007 371 CDD AdoMet_MTases 207 308 - -
Stsc121118g00007 371 Gene3D Vaccinia Virus protein VP39 117 371 IPR029063 -
Stsc121118g00007 371 Pfam Dimerisation domain 30 76 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121118g00007 Stsc-Chr121118 43802 46616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121118g00007 97 371 Monolignol Biosynthesis Gene Families AT1G51990 32.130 2.44e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121118g00007 K22588 - gmx:100811609 421.009