Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121118g00003 ATGGCTTCTTCTGCAAACAACAACAATAGCACCATCAAAATCCACGATAAATGCTTCGTTCCTCCTCCTAATTCTTCTTCTCCCCAACAATTTTCTCTCCCACTCACTTTCTTCGACCTCGTCTGGCTAAGGTTCCACCCTGTTGAACGCATCTTCTTCTATTCCCTTCCCACTCCACACTCATCCCTCCATTCCCTCCTCCACCAAGTGGTTCCAAATCTCAAGGACTCTCTCTCCCTTACCCTCCACCACTTCCTTCCTCTTGCTGGAAACCTTGTTTGGCCTTCTGATTCTAACAAACCACTGATTCAATACAACCTTGGTGATGGTGTTTCACTCACTATAGCAGAGTCTTTTCAGGACTTGAACCATTTCTTGGTGAATTCGCCCGTTGAAGCTTTGGATTCTCGCTCTTTGGTACCCAACTTGGAATCATCGGATTCTCATGCTTCTGTTATCTCTCTTCAGATCACACTCTTCCCAAACAGTGGCTTCACTATTGGGATCAGTTCCCACCATGCTGTTCTCGATGGAAAATCTTCAACTTTGTTCGTTAAGGCCTGGGCTTATCTATGTCGTGAATGTCAATTATCCAACCAAGAATCACCAAGTTTGGTTCCTGAATTGGTTCCCATCTTTGACAAGGAAGCCATTAAGGACCCAAATGGACGCGATATCATGTTCATAAACATGTGGAAACAACTATCGTCCCTGTTTGACCCCAACAACGATTGCAGCAGCAACGAAAGAACCCTTAAGATCATGTCAAGCGCGTTTCCGCCATTGGTGGATGACAGGGTTAGAGCCACGTTTGAGTTAACACGTGGAGATTTGGATAAGATTAGGAAAAGGGTGTTGTCCAATTGGGACATGGTGGATGATGATGATGATGATGATGAAGATGTTGTTAATCCAAAGTTGTCGAGTTTTGTTGTCACATGTGCCTATGTTTCTGTGTGCATTGCAAAAGCAACAGAGGAAGAATCCAAACAAAAGGGTAACAGTAGTAGTAATAATGAAAATAAATTCGTGTTTGGATTCAATGTGGATTGCAGGGCTAAATTGGAGCCTCCGGTTCACGAGAACTACTCTGGGAACTGCGTGTGCGGGCATATTGTTGATGCTGCAAAGCCAGAAGACTTCAGAAAAGAAAATGCGTTGGTGATTGTAGCGAAAAAGATTTACAGTAAGGTAAGATCGTTTGATAGCTTGGAAGGAGCGGTTGATGGAATAGAGACGCTGTTCTATAGAGGGATGATGATGCTGAAAGAAGGGGTGAAAGGAATAGGAGTGGCGGGATCACCGAGGTTTGGTGTTTATGGAATGGATTTCGGGTGGGGGAAGCCTGAGAAGGTTGAGATAACGTCGGTGGACAGAGGAATCACCATTGGGATGGCTGAGAGCAAGGATGGGAGTGGCGGAATTCAAGTGGGGCTTGTACTCGATAAACACGTGATGCCTATTTTTAATGATTTATTTCATGGTGGTCTTTGCTGA 1497 0.4456 MASSANNNNSTIKIHDKCFVPPPNSSSPQQFSLPLTFFDLVWLRFHPVERIFFYSLPTPHSSLHSLLHQVVPNLKDSLSLTLHHFLPLAGNLVWPSDSNKPLIQYNLGDGVSLTIAESFQDLNHFLVNSPVEALDSRSLVPNLESSDSHASVISLQITLFPNSGFTIGISSHHAVLDGKSSTLFVKAWAYLCRECQLSNQESPSLVPELVPIFDKEAIKDPNGRDIMFINMWKQLSSLFDPNNDCSSNERTLKIMSSAFPPLVDDRVRATFELTRGDLDKIRKRVLSNWDMVDDDDDDDEDVVNPKLSSFVVTCAYVSVCIAKATEEESKQKGNSSSNNENKFVFGFNVDCRAKLEPPVHENYSGNCVCGHIVDAAKPEDFRKENALVIVAKKIYSKVRSFDSLEGAVDGIETLFYRGMMMLKEGVKGIGVAGSPRFGVYGMDFGWGKPEKVEITSVDRGITIGMAESKDGSGGIQVGLVLDKHVMPIFNDLFHGGLC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121118g00003 498 Gene3D - 7 242 IPR023213 -
Stsc121118g00003 498 Gene3D - 263 498 IPR023213 -
Stsc121118g00003 498 PANTHER - 12 497 - -
Stsc121118g00003 498 Pfam Transferase family 23 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121118g00003 Stsc-Chr121118 28287 30143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121118g00003 39 493 Monolignol Biosynthesis Gene Families AT5G48930 22.796 5.52e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121118g00003 - - gmx:100813762 529.25