Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121118g00001 ATGCAGCACCAAGAAGCCATGAAACCTCTGCAAGTGTTCAAGGTATCACCCTCTTCATTGGGATCACAAAACTTGTTACCTTCTTCTTCCACATCTCTCCCTCTAACCTTCTTTGACATACTATGGCTAAGGTTACCACCTGTTCAACGAGTTTTCTTCTATGAATTCCCACACCAACCCTCACTCTTCTATGATGCCATTCTTCCTAAACTCAAACACTCTCTTTCTCTTTCACTTTCTTACTATTTCCCTCTTGCTGGAACCCTCACTTGGCCTCATCATTCCAACAAACCCATCATCACTTACAACCTTGGTGACACACTCTCACTTATCATAGCTGAATCTGATGCTGATTTCAACCATCTTTCAGGTTCTGACCTTTCTGAAGCCTCAAAGCTTCACCATCTTGTTCCTGAATTGATCATTTCCGATGATCAAGCCACTGTCTTGGCCTTACAAGTTACCCTATTTCCGAACTATGGATTCTCAATTGGAGTCACATCACACCATGCTGTTCTTGATGGAAAAACCTCAACATCCTTCATCAAATCTTGGGCTTATCTCTGCAACAAGCTAGGAGATTCATCATCATCATCATCACCTTGTGATTTGCCTCCAGAATTGAGTCCTTTCTTTGACAGAGAAATTGTGAAAGATCCCAAAGGGCTTGAAGCAAAGTATCTGAGTGATTGGTTAAAGCAAGGTGGACCAAACAACAGAAGCCTCAAGGTTTGGAATCTTCAAGTTCCAGAAGATTCAGTAAGGGGTTTGTTCAAACTATCTAGATCAAACATTGAAAGCCTCAAAAAATTAGTGGTGTCCAAAAAGAAAGAAACTATGAATCTCCACCTGTCAAGTTTTGTGATATCTCTTGCATATGCTATTGTTTGTAAAGTTAAAGCTGAGAAAGTTAACAGCAACAGAGTCTTTGTCGCTGTAAATGTTGATTGCAGGGCAAGATTGGATCCTCCTCTTCCTCCAACTTACTTTGGAAACTGTGGTGGTGCCAGAGTAGCGGTTGCTGAAACAAAAGGAATGTTGGGTGAAGATGGAATAGTTGTTTCTGTGGAATCACTGAGTAGTGCATTGGAAACTCTGAAGGATGGTGTGCTGAGTGGTGCAGAGAGTTGGTCATCATTTTTGCATGATGGTTTGAATAGGGATGATAAGTTTATGAGTGTTGCTGGGACACCAAGGTTTGAGGTTTATGGAAATGATTTTGGGTGGGGAAAGCCAAAGAAGGTGGAGATGGTGTCTATAGATAGAACTGGTGCATTTTGTTTCTCAGATAGCAGCAATGGTGATGGTGTTGAGATCGGTTTGGTCTCCAACAAAGAATCCATGGATGCATTTGCTTCTCTCTTTCTCCAAGGACTTGCATTTTAG 1386 0.4156 MQHQEAMKPLQVFKVSPSSLGSQNLLPSSSTSLPLTFFDILWLRLPPVQRVFFYEFPHQPSLFYDAILPKLKHSLSLSLSYYFPLAGTLTWPHHSNKPIITYNLGDTLSLIIAESDADFNHLSGSDLSEASKLHHLVPELIISDDQATVLALQVTLFPNYGFSIGVTSHHAVLDGKTSTSFIKSWAYLCNKLGDSSSSSSPCDLPPELSPFFDREIVKDPKGLEAKYLSDWLKQGGPNNRSLKVWNLQVPEDSVRGLFKLSRSNIESLKKLVVSKKKETMNLHLSSFVISLAYAIVCKVKAEKVNSNRVFVAVNVDCRARLDPPLPPTYFGNCGGARVAVAETKGMLGEDGIVVSVESLSSALETLKDGVLSGAESWSSFLHDGLNRDDKFMSVAGTPRFEVYGNDFGWGKPKKVEMVSIDRTGAFCFSDSSNGDGVEIGLVSNKESMDAFASLFLQGLAF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121118g00001 461 PANTHER - 10 460 - -
Stsc121118g00001 461 Gene3D - 249 461 IPR023213 -
Stsc121118g00001 461 Pfam Transferase family 27 453 - -
Stsc121118g00001 461 Gene3D - 3 238 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121118g00001 Stsc-Chr121118 10611 11996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121118g00001 51 457 Monolignol Biosynthesis Gene Families AT5G48930 24.292 1.74e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121118g00001 - - ahf:112744586 785.408