Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121116g00005 ATGGCTCTCGTCACTCCCAAAAGTAGTAGCTTCAATCCTACGGATCAAGAACTCGTTTTAAATTTTCTCTACAACAAGATCAATGGCAATCCTCTGCCTAGTGAAGCCACCACCAACATTCATCAATATGATGACTTATTGTTCGGCGAAAAGAAGCCGTGGCAGATTTGGGAGGCTTTTGGCGGTGACGGCGACGGAAGCGACGGCGGCGCGCTTTACTTCTTCTCAGTTAAGAAGAAGAAGAAAACCTCACGTTCTGAGAATGGTTCATGGGAGGAACTTGAGAAGAAGGCTAGAGCAAAACCTATAACCGTAAAAGAGGGAGCAAAGAAAGAAATAATTGGTACCAAGAAATCACTTGTTTGGAATGAGAATAATAATAATAGTGTTGTTAGTTCTTCATGGATCATACATGAATATATGCTTCATCAATCTAAGGTGTGCCACGAAAGTTATGCACGCAACACTGTTCTATGCAAATTGTTTAAAAATCAAGGGAATCATGTTCTGCAGGTGAAAACAGAAAATAAGCAATCCAGTCAACTGAAAATTGGAGCTGATACCACCAATTCTATTGACAACAATGATCGTTCCAAGTGTCCGGAAATTGGAGCTGCCGCCGCGACATCTACCTTTGACAATGGTGGCTGGAAAGATGCTTCACATAGAACAAAAAGGTTCAAAACAGGGCAACTCCTCCAAACACAGTGTGGTGGTGATGATGATGTTGGAAAGACTAAAGCAGATAGTGAAAGAAATATTACATTAATCTTGAGGAACACAATGTAA 789 0.4106 MALVTPKSSSFNPTDQELVLNFLYNKINGNPLPSEATTNIHQYDDLLFGEKKPWQIWEAFGGDGDGSDGGALYFFSVKKKKKTSRSENGSWEELEKKARAKPITVKEGAKKEIIGTKKSLVWNENNNNSVVSSSWIIHEYMLHQSKVCHESYARNTVLCKLFKNQGNHVLQVKTENKQSSQLKIGADTTNSIDNNDRSKCPEIGAAAATSTFDNGGWKDASHRTKRFKTGQLLQTQCGGDDDVGKTKADSERNITLILRNTM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121116g00005 262 Gene3D NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Stsc121116g00005 262 Pfam No apical meristem (NAM) protein 9 142 IPR003441 GO:0003677|GO:0006355
Stsc121116g00005 262 ProSiteProfiles NAC domain profile. 5 164 IPR003441 GO:0003677|GO:0006355
Stsc121116g00005 262 PANTHER NAC TRANSCRIPTION FACTOR 56 9 187 - -
Stsc121116g00005 262 SUPERFAMILY NAC domain 4 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121116g00005 Stsc-Chr121116 43794 44958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121116g00005 6 166 NAC Transcription Factor Family AT1G69490 28.652 4.74e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121116g00005 NAM 9.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121116g00005 - - adu:107495696 302.753