Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121116g00003 ATGGAAGAAAAGATTAGAACAGAAGAGCATTCATTGGCTCCATTATTACAAAACTATGGTGCTTCTGAGGATGAATATGTGAGCTTTCTGATTGAGAGAGAAACGGGTAGTAGTACTCTTGGTTTCAAAAATAGTGACCCTTTGGTGTTTCAGAATTGCTTCACACATTCACGAACGGATGCTATTAATTGGATTCTTCAGACAAGAGCAGCACTTGGTTTTAGCTTTCAAACAGCTTATTTGTCTCTGGCATATTTTGACAGATTCCTCTCCAAATGTTCCATTGATAGTGATAAGAGCTGGGCAATGAGGTTACTATCAGTTGCATGTCTTACTCTAGCTGCAAAGATGGAGGAGCACCAAGTGCCGGCGCTACCGGAGTTCCAATCGGAAGATTATTGCTTTGAAAACAAAGTGATTAAGAGAATGGAGCTCTTGGTGCTTAGCACATTGGAATGGAACATGGCTATAATCACCCCATTAGTGTTTCTTCCTTATTTCATCACAAAGTTCTGCAATGAATCCCAAACATGCCATGTTTTTCCCAAGGCTATGGAAATCATCTTCACACTAATACAAGAGGTCAATTTAATGGATCATAGGCCATCTGTTATTGCAGCTGCAGCAACTTTGGTTGCAATGGATCAGCATTTGACAATAGAAGCAGTAGAATTGAAGATGAGTTCAATTCATCAATTCACATTTCTTAAAGCTGAAGATATATTTGCATACTATAATCAAATTCAAAGTTTTTACAATGAGAAAACTATAAGACACATTCATTTTCCTGGCCCTTCACCTCACCTATCATGGCCAGTTGGCATGGCAGGGAGCTCTGTGGTAGCTTCTGCAGCCATGAACAAGAGAAGGAGACCTACATTCAATAATGATAAAGAAGGTTGTGATGATGAGTAA 915 0.3923 MEEKIRTEEHSLAPLLQNYGASEDEYVSFLIERETGSSTLGFKNSDPLVFQNCFTHSRTDAINWILQTRAALGFSFQTAYLSLAYFDRFLSKCSIDSDKSWAMRLLSVACLTLAAKMEEHQVPALPEFQSEDYCFENKVIKRMELLVLSTLEWNMAIITPLVFLPYFITKFCNESQTCHVFPKAMEIIFTLIQEVNLMDHRPSVIAAAATLVAMDQHLTIEAVELKMSSIHQFTFLKAEDIFAYYNQIQSFYNEKTIRHIHFPGPSPHLSWPVGMAGSSVVASAAMNKRRRPTFNNDKEGCDDE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121116g00003 304 Gene3D - 157 247 - -
Stsc121116g00003 304 SMART Cyclin_C_2 158 274 IPR004367 -
Stsc121116g00003 304 SUPERFAMILY Cyclin-like 141 230 IPR036915 -
Stsc121116g00003 304 FunFam Cyclin-D5-1 53 156 - -
Stsc121116g00003 304 SMART cyclin_7 63 149 IPR013763 -
Stsc121116g00003 304 Pfam Cyclin, C-terminal domain 158 255 IPR004367 -
Stsc121116g00003 304 Pfam Cyclin, N-terminal domain 55 155 IPR006671 -
Stsc121116g00003 304 SUPERFAMILY Cyclin-like 24 155 IPR036915 -
Stsc121116g00003 304 CDD CYCLIN_AtCycD-like_rpt1 58 153 - -
Stsc121116g00003 304 PANTHER CYCLINS 23 226 IPR039361 -
Stsc121116g00003 304 Gene3D - 52 156 - -
Stsc121116g00003 304 CDD CYCLIN_AtCycD-like_rpt2 158 248 - -
Stsc121116g00003 304 ProSitePatterns Cyclins signature. 58 89 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121116g00003 Stsc-Chr121116 28357 30501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121116g00003 23 234 Core Cell Cycle Gene Families AT4G37630 37.668 1.12e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121116g00003 K18811 - gmx:100798728 319.316