Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121113g00006 ATGGCGACCCGAGGGGTTAATAAACCTCGTTCACTCCCTCCATACCCCGAGATGATATTGAAGGCAATTGAAGCTCTTAACGAAGAGAACGGTTCAAACAAAACGACAATATCAAAGTACATAGAATCCACGTACGGAGGTTTGCCCGAGGGGCACAAGGCACTTCTCAATGTGCACCTTGCAAAGATGAGGGACAGTGGTGAGCTTGTCTTTTGGAAAAACAACTACACTATTCGTGACCCCCATGCCCCACCGCGTCGGGGCCGCGGTAGGCCGCCAAAGCCCAAGGATCCCCCTTCCCCGGGCAACATTATTACACCCTCTAGGCCAAGGGGACGGCCCCCAAAGGACCCAAATGAGCCGCCACGCACGCCTAAGTCCAAGACCTCAGGTGGGAGTGGCAGGCCGAGAGGGCGGCCAAGGAAAATGGCCCGGCCCTCGGGGGGATTTGATAGCCCTCCACCATCAGTGGTGGTGGGGGGCTCGCCTAGTGGGAGGGGTAGAGGTAGGCCTCCCAAAATGAAGGGTCCATTGGCGGATATTAGTGTTGAGCAATAG 558 0.5609 MATRGVNKPRSLPPYPEMILKAIEALNEENGSNKTTISKYIESTYGGLPEGHKALLNVHLAKMRDSGELVFWKNNYTIRDPHAPPRRGRGRPPKPKDPPSPGNIITPSRPRGRPPKDPNEPPRTPKSKTSGGSGRPRGRPRKMARPSGGFDSPPPSVVVGGSPSGRGRGRPPKMKGPLADISVEQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121113g00006 185 Gene3D - 7 84 IPR036388 -
Stsc121113g00006 185 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Stsc121113g00006 185 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Stsc121113g00006 185 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Stsc121113g00006 185 Pfam AT hook motif 109 119 IPR017956 GO:0003677
Stsc121113g00006 185 Pfam AT hook motif 134 144 IPR017956 GO:0003677
Stsc121113g00006 185 Pfam AT hook motif 165 176 IPR017956 GO:0003677
Stsc121113g00006 185 PRINTS High mobility group protein (HMGY) signature 99 110 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc121113g00006 185 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc121113g00006 185 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc121113g00006 185 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Stsc121113g00006 185 PANTHER HISTONE H1 11 175 - -
Stsc121113g00006 185 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc121113g00006 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc121113g00006 185 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Stsc121113g00006 185 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Stsc121113g00006 185 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Stsc121113g00006 185 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Stsc121113g00006 185 MobiDBLite consensus disorder prediction 78 185 - -
Stsc121113g00006 185 SUPERFAMILY "Winged helix" DNA-binding domain 8 89 IPR036390 -
Stsc121113g00006 185 FunFam HMG-Y-related protein A 7 89 - -
Stsc121113g00006 185 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc121113g00006 185 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121113g00006 Stsc-Chr121113 33740 35157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121113g00006 18 78 Single Myb Histone (SMH) Gene Family AT1G49950 42.623 9.48e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121113g00006 - - gmx:100803968 216.083