Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121113g00004 ATGGCATCTTCCTTGGACATGTCACTTGATGATAGAATAAAGAACAGGAGTAACAGAGGGAGAGCTAGAGGACGTGGCAGAGCCCGTTCTGGCCGTGGAGCAAGCGGGACTCTAGGTGGTGGGAGAATGAATGGTACTGTTAATGGTAGAAGAATGATGACTGGTGCTGTGCGCAGAGGTCCTCTAACGGTTAATGCTCGGCCATCATCTTATGCTATCGCAAAGTCCATTCGCAGAGCCAGGCCTTTTCCATGGCAGCATGATTTATTTGAAGATAGCCTTCGAGCTGCTGGAATACAGGGAATTGAAGTTGGCACCAAGTTGTATGTATCGAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTTGCTGAGCTTGGAGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGGCACCAAAGTGGTTCTGCAGAAGTTGTCTATGCTAGAAGAAGTGATGCTTTTGCTGCTCTTAAACGATATAACAATGTCCTTTTGGATGGAAAACCTATGAAGATTGAGATTGTTGGTGCCAATGCAGAGGTGCCTGTATCTGCTCGTGTGAATGTCACAGGAGTTAATGGGCAGAGGAAACGGACTGTTGTGATGGCGCCTAGAGGGGGTCGAGGTGGAGGTCCTGCTGTCCCTAATCGTGGTGGTGGTGGTGCTGCTGCGGGTGCTGGTTGGGGATACCGTGGCGGCCCGCCAAGGAGCGGGAGTGGACGAGGACGAGGCCGGGGGCGTGGCAGGTCTGGCATCCGAGGTCGTGGGAAAAAGGATGCCGTTGAGAAGTCAGCTGAGCAACTTGATAAAGAATTGGAGAACTATCATGCTGTTGCGATGCAGTTCTGA 867 0.5017 MASSLDMSLDDRIKNRSNRGRARGRGRARSGRGASGTLGGGRMNGTVNGRRMMTGAVRRGPLTVNARPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAELGELKRYAVHYDKNGHQSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEIVGANAEVPVSARVNVTGVNGQRKRTVVMAPRGGRGGGPAVPNRGGGGAAAGAGWGYRGGPPRSGSGRGRGRGRGRSGIRGRGKKDAVEKSAEQLDKELENYHAVAMQF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121113g00004 288 Coils Coil 264 284 - -
Stsc121113g00004 288 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 287 - -
Stsc121113g00004 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Stsc121113g00004 288 SMART rrm1_1 107 179 IPR000504 GO:0003723
Stsc121113g00004 288 SUPERFAMILY RNA-binding domain, RBD 31 180 IPR035979 GO:0003676
Stsc121113g00004 288 MobiDBLite consensus disorder prediction 208 270 - -
Stsc121113g00004 288 Gene3D - 102 182 IPR012677 -
Stsc121113g00004 288 MobiDBLite consensus disorder prediction 1 48 - -
Stsc121113g00004 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Stsc121113g00004 288 SMART FoP_duplication_2 213 287 IPR025715 -
Stsc121113g00004 288 CDD RRM_THOC4 106 180 - -
Stsc121113g00004 288 Pfam C-terminal duplication domain of Friend of PRMT1 228 283 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121113g00004 Stsc-Chr121113 24418 28767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121113g00004 105 241 Eukaryotic Initiation Factors Gene Family AT2G23350 33.577 1.00e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121113g00004 K12881 - gmx:100820344 358.221