Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121113g00001 ATGGGAAGGCAACCATGCTGCGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCTGAGGAGGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTTGCAGGGCTGTTAAGGTGTGGAAAAAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCTGACTTAAAGAGAGGCCTTCTATCAGAATATGAGGAGAAAATGGTCATTGACCTCCATGCTCAATTAGGCAACAGGTGGTCTAAGATTGCTTCACATCTGCCTGGGAGAACTGATAATGAGATAAAGAATCATTGGAACACACACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTCACACACAAGCCACTCTCTAGTAACACCACTCACCAAAATCAAACCAAACCAGAAGAACCATCACCACCACTGCAAGAACAAGAACAAGATCATCATGAGTCTTCCACAGTTGACCAAGAAGTCAAACTTGTTGAACCTGAAATCAAGGAGGCAGAGGCTGAGGCTGAGGATCAGTTCATGACACCACTGTTTGAATCAATGGACACAATAATAATGAACGAATTCTGCACAGATGAAGTTCCAATTATAGAAGCTGATGAGATCCTTGCTCCATGTGGTGGTGATGCTTCTACTTCATCAACAACAACAGCAACAACATCCTCATCATTATCATCTTCTGCTTCTTCTTCTTCTAATTCTTATTCAAATCCATCATCCAATAATAAGTTCCTTGAAGACCTTCTTCTCTCAGAATCTGAATGGTCCAACAACAACAATAGCAGCATGACCTTATGGGATGATCATGACTTTATTAGCAATTTGGATATGCTTCTTAATGATGATTATTATGACTGTGACAGAAAACAGCAGCAGCAACCTTTTGATGCTTCACTCAATCCGTACCCAAGAATGGTCATGGATTCATCAGAATCTTGGGCTTATGGCTTGTTTTAA 987 0.4184 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSSNTTHQNQTKPEEPSPPLQEQEQDHHESSTVDQEVKLVEPEIKEAEAEAEDQFMTPLFESMDTIIMNEFCTDEVPIIEADEILAPCGGDASTSSTTTATTSSSLSSSASSSSNSYSNPSSNNKFLEDLLLSESEWSNNNNSSMTLWDDHDFISNLDMLLNDDYYDCDRKQQQQPFDASLNPYPRMVMDSSESWAYGLF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121113g00001 328 Gene3D - 70 157 - -
Stsc121113g00001 328 SMART sant 66 114 IPR001005 -
Stsc121113g00001 328 SMART sant 13 63 IPR001005 -
Stsc121113g00001 328 FunFam MYB transcription factor 11 67 - -
Stsc121113g00001 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc121113g00001 328 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc121113g00001 328 Gene3D - 11 67 - -
Stsc121113g00001 328 CDD SANT 16 61 IPR001005 -
Stsc121113g00001 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc121113g00001 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc121113g00001 328 PANTHER F14D16.11-RELATED 1 282 - -
Stsc121113g00001 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc121113g00001 328 FunFam MYB-related transcription factor 70 130 - -
Stsc121113g00001 328 MobiDBLite consensus disorder prediction 126 146 - -
Stsc121113g00001 328 MobiDBLite consensus disorder prediction 218 250 - -
Stsc121113g00001 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc121113g00001 328 CDD SANT 74 112 IPR001005 -
Stsc121113g00001 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc121113g00001 328 MobiDBLite consensus disorder prediction 121 163 - -
Stsc121113g00001 328 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121113g00001 Stsc-Chr121113 3058 5138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121113g00001 1 292 MYB Transcription Factor Family AT1G66230 55.663 1.10e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121113g00001 Myb_DNA-binding 9.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121113g00001 K09422 - gmx:100803624 400.979