Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121112g00011 ATCACTACCCTTGATAAGGACAATCTCACTGCCCCAACATACCTTGGTAGGCCATGGAAGGAGTACTCCACCACTGTGATCATGCAATCTGACATTGGCCCATTCTTGAAGTCCGTTGGGTGGGTAAGTTGGATACCCAATGTAGAACCTGCAAATACCATTTTCTATGCTGAGTACCAAAACAGTGGGCCTGGGTCAGGTGTATCCCTAAGAGTTAAATGGGCTGGGTACAAGCCCACTCTCACTGATCTTGAGGCAGGAAAGTACACGGTCCAGTCATTCATTCAAGGCCCAGAATGGCTCAAAGATGCTTCAGTTCAGTTTGAGTCTACCTTGTGA 339 0.4749 ITTLDKDNLTAPTYLGRPWKEYSTTVIMQSDIGPFLKSVGWVSWIPNVEPANTIFYAEYQNSGPGSGVSLRVKWAGYKPTLTDLEAGKYTVQSFIQGPEWLKDASVQFESTL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121112g00011 112 Gene3D - 1 112 IPR012334 -
Stsc121112g00011 112 Pfam Pectinesterase 6 97 IPR000070 GO:0030599|GO:0042545
Stsc121112g00011 112 PANTHER PECTINESTERASE 7 102 - -
Stsc121112g00011 112 SUPERFAMILY Pectin lyase-like 6 108 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121112g00011 Stsc-Chr121112 59558 60100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121112g00011 8 101 Carbohydrate Esterase AT1G53840 56.383 1.29e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121112g00011 - - gmx:100784642 192.2