Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121109g00003 ATGCAGAACGAGGAGGGGCAGATCACTGAGCTCTACATTCCTAGGAAGTGCTCCGCAACAAACAGGTTGATAACCGCAAAGGACCATGCGTCGGTGCAGATCAACATTGGTCACTTGGATGAGAGTGGTCAATACAATGGCACCTTCTCCACATTCGCCCTCTGCGGCTTCATTCGCGCTCAGGGGGATGCTGACAGTGCACTAGATCGCTTGTGGCAAAGGAAGAAAGCTGAGAAGCAGCAGCAGTAG 249 0.5261 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGQYNGTFSTFALCGFIRAQGDADSALDRLWQRKKAEKQQQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121109g00003 82 FunFam 40S ribosomal protein S21 1 81 - -
Stsc121109g00003 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Stsc121109g00003 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Stsc121109g00003 82 Gene3D - 1 82 IPR038579 -
Stsc121109g00003 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Stsc121109g00003 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 79 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121109g00003 Stsc-Chr121109 31765 33982 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121109g00003 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.247 6.91e-49 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121109g00003 K02971 - gmx:100817753 154.836