Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121108g00009 ATGACAAGGAAGAAGATAGAGATAAAGAAGATCGATAACATAAGTTCAAGGCAGGTGACGTTTTCAAAGAGAAGGAAAGGGCTGTTCAAGAAGGCTCAGGAGCTTAACACTCTCTGTGATGCTGAAATTGCTCTCATTGTTTTCTCCAATACCAACAGGCTATTCCAATATGCTACTTCAAGTATGCAGCGGGTAATTGAAAAACATAATCAGCACTCGGAAATTAATAGATCGGTTGAGAGTAGTGATGATGATTATGATATGCTGTGCAAGAAAGAGGAACAAAAGGCTCTTGAACTCAGACACTTGAATGGAGAAGATCTTCAAGGATTGACACTAAAAGAACTCCAGAAACTAGAAGAACAACTCCAAAGAGGGTTGACCAATGCTATCAAAGTAAAGGATGAAAAAATGAAGTTAGGGATCAGCAACCTTAAGAGAAAGGGAGTGAAACTGATGGAAGAGAACAACAAACTGAAGCAGATGTCATCAAGCCTTATGAACAGGAAAATCCATTCCCCTGAACCCATTGGTGCCTCCTGCATCTTTTCAGGTGACTCATCAAGAACATGGTATAGACACATACCTTAA 591 0.3976 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSNTNRLFQYATSSMQRVIEKHNQHSEINRSVESSDDDYDMLCKKEEQKALELRHLNGEDLQGLTLKELQKLEEQLQRGLTNAIKVKDEKMKLGISNLKRKGVKLMEENNKLKQMSSSLMNRKIHSPEPIGASCIFSGDSSRTWYRHIP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121108g00009 196 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Stsc121108g00009 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc121108g00009 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc121108g00009 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc121108g00009 196 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc121108g00009 196 ProSiteProfiles K-box domain profile. 79 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc121108g00009 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc121108g00009 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc121108g00009 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc121108g00009 196 Pfam K-box region 78 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc121108g00009 196 Coils Coil 116 136 - -
Stsc121108g00009 196 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Stsc121108g00009 196 Coils Coil 142 162 - -
Stsc121108g00009 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121108g00009 Stsc-Chr121108 28016 39951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121108g00009 1 166 MADS-box Gene Family AT2G22540 46.893 6.62e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc121108g00009 K-box 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121108g00009 - - aip:107631071 218.394