Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121108g00008 ATGACAAGGAAGAAGATAGAGATAAAGAAGATCGATAACATAAGTTCAAGGCAGGTGACGTTTTCAAAGAGAAGGAAAGGGCTGTTCAAGAAGGCTCAGGAGCTTAACACTCTCTGTGATGCTGAAATTGCTCTCATTGTTTTCTCCAATACCAACAGGCTATTCCAATATGCTACTTCAAGTATGCAGCGGGTAATTGAAAAACATAATCAGCACTCGGAAATTAATAGATCGGTTGAGAGTAGTGATGATGATTATGATATGCTGTGCAAGAAAGAGGAACAAAAGGCTCTTGAACTCAGACACTTGAATGGAGAAGATCTTCAAGGATTGACACTAAAAGAACTCCAGAAACTAGAAGAACAACTCCAAAGAGGGTTGACCAATGCTATCAAAGTAAAGGATGAAAAAATGAAGTTAGGGATCAGCAACCTTAAGAGAAAGGGAGTGAAACTGATGGAAGAGAACAACAAACTGAAGCAGGTGACTCATCAAGAACATGGTATAGACACATACCTTAAGTTGGGGCTGCCTTAA 537 0.3948 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSNTNRLFQYATSSMQRVIEKHNQHSEINRSVESSDDDYDMLCKKEEQKALELRHLNGEDLQGLTLKELQKLEEQLQRGLTNAIKVKDEKMKLGISNLKRKGVKLMEENNKLKQVTHQEHGIDTYLKLGLP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121108g00008 178 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Stsc121108g00008 178 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc121108g00008 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc121108g00008 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc121108g00008 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc121108g00008 178 Coils Coil 116 136 - -
Stsc121108g00008 178 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Stsc121108g00008 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 143 - -
Stsc121108g00008 178 Coils Coil 142 162 - -
Stsc121108g00008 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc121108g00008 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc121108g00008 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc121108g00008 178 ProSiteProfiles K-box domain profile. 79 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc121108g00008 178 Pfam K-box region 78 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121108g00008 Stsc-Chr121108 28016 39951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121108g00008 1 161 MADS-box Gene Family AT2G22540 47.674 1.31e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc121108g00008 K-box 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121108g00008 - - aip:107631071 219.935