Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121107g00011 ATGAAGAATCTCGTGGGGATTGAATCAAGAGTGGAACAATTGATTAGTCAAATAGGCCTTGGATTAAATGATGTTCGCTACATCGGCATATGGGGAATGGGCGGCATAGGTAAGACAACTATTGCTAGAGCAATATATGAAACCATTCGTTGTAGATTTGAGGTTACTTGCTTTCTTGCCGATGTAAGGGATCATTGTGAAAAAAAAGATATTGCCCACGTACAGAAACAACTTCTTGATCAAATGCATATAGGCTCAACTACTGTTTATTGCAAATATGATGCGAGAAAAATAATTCAAAACTCTTTACGTTTCAAAAAGGTTCTTCTTGTTCTCGATGATGTAAATGATGAAGAACAATTAGAGAATTTGGCTGGAGAACAAAATTGGTTTGGTCAAGGGAGTAGAATAATAATCACAACTAGAGACATACGTCTACTGCGGAAACAAGAGGTTGATGAAACTTATGAGGTTGAAGGGTTAGGGAAAAATGAAGCCTTGAACCTCTTTTGTTCTAATGCTTTTAAACGGCTAGAACCTCCAAAAGGTTTTCGGGATTTGTCCAATGAAATGGTCAAGTACAGTGGTGGTCTTCCATTGGCACTTGAAGTACTAGGTTCCCATTTTTTTGATAAACCCATGAAGGTTTGGCGCAGTGCTATCGAAGATATAAAGAAATCTTCACATAATAAAATTATTGATGTATTGAAAATAAGCTATAATGGTTTACGTTCTACGGAAAAAGACATTTTTCTAGATATTGCTTGTTTCTTTAAAGGATATAAGAAAGATTATGTAACAAAGACGTTAGAACGATGTGATCATAATGCTGAAATTGGTATTGATATTTTGATTAATAGATCATTGGTTACTATAGATAAACATGATAGGTTGAGGATGCATGATCTGGTTGAAGAAATGGGCAAACTCATTGTAATTGAAGAATCTCCAAATGATGTTAGTAAGCGAAGCAGATTGTGGTGTTACAAGGATATTGCCTCTCTACTTGCTCAAAAGCAGGAAATTGAAGCAACTCAAAGCATAGTTCTATATAGGTGCTGGCCGGATATTGAAGAGAATTGGAGAGATTTGGATATAAGAGGTCCATCTTTCTCAAAGCTAAAGCTTCTTATTTTACATGGCGTGAAAGCTCCTATTCTCTACAAAATTCCTTGTACATTAAAGGTTTTGCACTCTAGAGATTGTCAAACAGAAACTCTGTCCTTAACAGATCAACACTATGAACTTGTTGAAATTGATGTGTGTGAAAGAGAACTTGTACGGTTATGGGATGGAAAGAAGTTTCTAAATAATTTAGAGCACTTGAATCTGTCCGACTGCCACAAGCTGAAGGAAACACCAGATCTTTATGGGGCTCCCAATCTTAAAACACTTCATCTTCAAAATTGTCGTAAGCTGAATTATATTCACCCATCTCTTACCCACCACAAGAGCCTTGTTGAATTGAATTTAAGTGGATGTTGTCGTCTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCAAGAAACTAGATCTATCCCGTTGCACTAGTTTGCGAAGAGTACCAGAATTTGGGGAATGCATGAAACAGTTATCGATGCTTACTTTGGGTCTTACAGACATAGAAGAGCTACCCAGTACGTTTGGAAATTTGGTTGGCCTGACTGAGTTGTACTTATCTGTATGGGAGTATATTGGTCATTCCATATCACATGGATGTTTCCTTTGCCTAAAGAAGTTGTCGTTAGAGGCATACAAGGGGCTTAATTGTGTTCCATTCGACAACAGTCTTGGGTTAGAGTCCCTCACAGTTACTGCTTCTCATCACATCCAAAATTATGGAATTTTGAGTTCTGTCTCTCTTCTAACCTCTTTGAGTAGTCTCACATTTAATTGTTTTCCCAACTCTGAAGATTCTATCCCTTATTACGACCTTGACCACTTAGCGCTCTTGACGGATTTGGATTTATCAGAAAACCATTTTAAAAGAGTTCCGATAAGTATCCATCAACTTCCCAAACTTAAACAGCTGCAGCTAAATAATTGCTCTAAATTGGAGGTTTTGCCAGATCTTCCATCAAGTCTAAGACTATTACAAGCAATTGGTTGTCATTCGCTGGATGCATCCAAGGTGAATGATGTAATATCAAAGGCCAGTTGTGTCTTTGCAGAATCAGCTACCCAAGATGGTGAAGACGTCTTTGAAATGGTGATCACTGGGAAGGACATTCCAGCATGGTTTAACCATCGGGAACAAGGTAACGGAGTATCAGTCTCATTCTCGCATAATTGCCCTTCAACTAACCCCATGGCACTTTCTCTCTGTTTCGTATTTGATGGTCAAAACCACGAGATCAGACATTCAGTGATCTGCTGCAATGGTAAAGAATTCATCAACAAGAGTTTATTAAAGGTGTTGCCCGATATGTATTCTGGGAATATGTACATTGTGTTCCTGAATGGTTACTATTTTAGTAACCTCTTAGGCCAACACAATCGCTTCCAAATCCTATTTCCCGACAATACTTATTATAATATTAATAGCCCTGTAACAAGATCTGCAGCACATTGGGTGTGTAACCAAGACAGCCAAGATTTCAAGAAAAGAAAAGCAACTCTTCAACTGAGTAAGCAAGATATCATGCCACTCTATGAACAAGAGGAAGGGTGTGCATCTCACCAAAGCTCTGACAATAACTGA 2706 0.3795 MKNLVGIESRVEQLISQIGLGLNDVRYIGIWGMGGIGKTTIARAIYETIRCRFEVTCFLADVRDHCEKKDIAHVQKQLLDQMHIGSTTVYCKYDARKIIQNSLRFKKVLLVLDDVNDEEQLENLAGEQNWFGQGSRIIITTRDIRLLRKQEVDETYEVEGLGKNEALNLFCSNAFKRLEPPKGFRDLSNEMVKYSGGLPLALEVLGSHFFDKPMKVWRSAIEDIKKSSHNKIIDVLKISYNGLRSTEKDIFLDIACFFKGYKKDYVTKTLERCDHNAEIGIDILINRSLVTIDKHDRLRMHDLVEEMGKLIVIEESPNDVSKRSRLWCYKDIASLLAQKQEIEATQSIVLYRCWPDIEENWRDLDIRGPSFSKLKLLILHGVKAPILYKIPCTLKVLHSRDCQTETLSLTDQHYELVEIDVCERELVRLWDGKKFLNNLEHLNLSDCHKLKETPDLYGAPNLKTLHLQNCRKLNYIHPSLTHHKSLVELNLSGCCRLETLGDKLEMSSLKKLDLSRCTSLRRVPEFGECMKQLSMLTLGLTDIEELPSTFGNLVGLTELYLSVWEYIGHSISHGCFLCLKKLSLEAYKGLNCVPFDNSLGLESLTVTASHHIQNYGILSSVSLLTSLSSLTFNCFPNSEDSIPYYDLDHLALLTDLDLSENHFKRVPISIHQLPKLKQLQLNNCSKLEVLPDLPSSLRLLQAIGCHSLDASKVNDVISKASCVFAESATQDGEDVFEMVITGKDIPAWFNHREQGNGVSVSFSHNCPSTNPMALSLCFVFDGQNHEIRHSVICCNGKEFINKSLLKVLPDMYSGNMYIVFLNGYYFSNLLGQHNRFQILFPDNTYYNINSPVTRSAAHWVCNQDSQDFKKRKATLQLSKQDIMPLYEQEEGCASHQSSDNN 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121107g00011 901 Gene3D Ribonuclease Inhibitor 505 719 IPR032675 -
Stsc121107g00011 901 Gene3D Ribonuclease Inhibitor 353 504 IPR032675 -
Stsc121107g00011 901 Gene3D - 160 244 IPR042197 -
Stsc121107g00011 901 PRINTS Disease resistance protein signature 504 520 - -
Stsc121107g00011 901 PRINTS Disease resistance protein signature 102 116 - -
Stsc121107g00011 901 PRINTS Disease resistance protein signature 195 209 - -
Stsc121107g00011 901 PRINTS Disease resistance protein signature 27 42 - -
Stsc121107g00011 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 254 IPR027417 -
Stsc121107g00011 901 Pfam NB-ARC domain 23 241 IPR002182 GO:0043531
Stsc121107g00011 901 SUPERFAMILY L domain-like 350 708 - -
Stsc121107g00011 901 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 706 IPR044974 GO:0006952
Stsc121107g00011 901 SUPERFAMILY "Winged helix" DNA-binding domain 230 336 IPR036390 -
Stsc121107g00011 901 Gene3D - 1 155 IPR027417 -
Stsc121107g00011 901 Pfam C-JID domain 741 790 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121107g00011 Stsc-Chr121107 51895 54877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121107g00011 3 632 WRKY Transcription Factor Family AT4G12020 31.288 1.98e-71 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121107g00011 - - adu:107485884 946.036