Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121107g00005 ATGGCATCCGCCTCTTGTTCCACTTCAATCCCACCCCAGCCACCAAGTTCATACAGCCATCACGTGTTCTTGAGTTTTAGAGGAGAAGACACTCGCAACGGATTCACTAGCCATCTCTATGCTGCCCTTAACAGAAAGGGAATCACTACCTACAACGATGACAAAAAGCTTCGCAAAGGCGATGTTATTTCAGATGAACTCCTGAAAGCAATTGAAGAGTCTATGTTTGCAGTCATTGTTTTCTCATCGGACTATGCTTCCTCCAGTTGGTGCTTGGATGAGCTCTGCAAGATCATTGACTGCAAGAACAAGCTGGGGCTACAGATGGTGGTAGGGTTTTATGATATGGAACCATGTGATGTGAGGCACCAAATTGGAACCTTCAGAGAAGCTTTCAAGAAACATGAAGAGAGATACGACACGATGAAGGTTCAAAGATGGAAAGAGGCGTTAAAACATGTTGCTGAATATTCTGGATGGAGCTCCAAAAATCAGTATATGGGGATTGGGCGGCATAGTAAGACTACTATTGCTAGGGCAGTCTTTGAAACCATTCGAAGTAGATTTGAAGCTTCTTGCTTTGTTGCTGATGTAAGGCAGTATTTTGAGAAACAAGATATTACTGACTTGCAAAACCAACTTCTCAAACAAATGAATATAATAAGTTCAGATGCTTATTATAACAAGTATGATGGGAGCAAAATAATTCAAACCTCTTTTCGTCGGAAAAAGGTACTTATTGTTTTTGATGATGTAAGTCATGAAAATCAACTAGAGAATTTGGCCAAGGAGAAAGATTGGTTTGGTGCTGGAAGTAGAATAATAATTACAACTAGAAACAAAGAGGTGCTAAAGCAACAAGAGGGGCATGAAACTTATGAGGTTAAAGTGTTAGTGGAAAGGGAATGCTTTGAACTGTTTTGTTCGGAAGCTTTTAATCAGGCAGAACCTTTAGAAAGGTTTTTGGATTTGTCGAAAGAAGTGGTGAATTATTGTTCTGGTCTTCCATTGGCACTTAAAGCTACATGGATGCAAGACGTCATTGCGTCATGTCCATACATTGAGATGCGACATAGTTTTACGCTGGCTGTCGCGGGCCTAACACAACCCCACATGATTCCAAAGACGTCATTGCGTCGTGGCCATGTATGGGGAACCCCTCCTCCTTTATCCGGGCTTGGGACCGGCTATACTACCCCAGGAGGGGAGAAAAATGGAGTAACGAAGATATTAAAAGAATGTGGTTATGATGCTGAAATTGGAATTGATATTTTGATTAATAGATCATTACTCACATTAGAGCTGGATTGGAAACGAGATACTCTTATTGGGATGCATGATCTGGTTGAAGAAATGGGCAAACAAATTGTAATTCAAGAATCTGCAGATGGTGCTAGTAAGCGTAGCAGATTGTGGTGTTACGAGGATATTGACTCTGTACTTGCTCAAAGGCAGGACATTGAAGCAACTCAAAGCATGGCTCTACGTATGGACCAGAAGTATACTGGAGAGAATTGGAGAGATTCGGATATAAGAGGTTCATGTTTCTCAAAGCTACAGCTTCTTATTTTAGATGGCGTGACAGCTCGCATTCTCTGCAATATTCCTAGTACATTAAAGGTTTTGCGCTGGAAAAAATGTCCAATGGAAACTCTGCCCTTAATTACAGATCAACGCTATGAACTTGTTGAAATTGATCTGCGTGAAAGCCAAATTGTACAATTATGGGAGGGAAAGAAGTTTCTAAATAAGTTGGAGCACTTGAATCTGTCCAGCTGCCACAAGCTGAAGGAAACACCAGATCTTTCTGGGGCTCCCAATCTTAAAACACTTACTATTAGATATTGTGTTGAGCTGAATTATATTCATCCGTCTCTTACACACCACAAGAGCCTTGTTAAATTGAATTTAGGGGAATGTTATCGTCTTGAAACAGCTGGAGATAAATTGGAGATGAGTTCACTCAAGAAACTAACTCTATTAGAATGCAGTAGTTTCTGGGAACTGCCAGAATTTGGGGAATGCATGAAACAGTTATTGATTCTTACTTTGACACTTGGCATAGGAAAGCCACCCAGTACGTTTGGAAATTTAGTTGGCCTCACTGAGTTGGAATTATATGTAAAGTATATTGGTAGTCCCATATCACTTGGATGTTTACTTTCCCTAAAGAAGTTGTCGTTAAACTTTTTGTTTGACTTATACGACTACAGGAGTGAAATCCAAAACATAGATGTACTTTTGAGATCTGTCTCTCTTCTAACCGCTTTGAGTAGTCTGAAATTATTTCAATGTTTCCTCGAATCTGAAGAGTCTACCCCTTACTACGATCTTGGCCAATTACCGTTCTTGACGAAGTTAGATTTATCGTGGAACCTTTTTAAAAAAGTTTTGCCAGATCTTCCATCAAGTCTAAGACTATTACAAGCAATTGGTTGTTATTCACTGGATGCATCCAATGTGAATGACGTAATATCAAAGGCGTGTTGTGTCTTCGCAGAATCAGCTAGCCAAGATGGTGAAGACGTCTTTGAAATGGTGATCCCTGGGACTGGGAGGGAAATTCCAGCATGGTTTGAGCATCAGGAACAAGGCAACGGAGTATCACTCTCATGCCCTTCAACTAAAACCATGGCACTTTCTCTCTGCTTCGCATTTGATAATCCATTCTATGGCACGAAATCTTTTGTGATCTGCTGCAATGGTAAAGAATTCATCAACAAGAGTTTATTAAAGGTGTTTCCCTGCATGCATTCTGGGTTTATGGCCATTGTCTTCCTGAATGGTTACTATGTTAGTAACCTGTTAGGCCAACACGATCTCTTTCATATCCTATTTCCCAATTATGCTGATAAGAACAATGTAGGGAGATCTGCAGCACGTTGGGTGTGTAACCAAGACATTCAAGTTCCAAATTTCAAGAAAAGAAAAGCAACTCTTCAACTGAGTAAGCAAGATATCATGCCACTCCATGAAGAAGAGGAAGGGTGTGCATCTCACCAAAGCTCTGACAATAACTGA 3021 0.4042 MASASCSTSIPPQPPSSYSHHVFLSFRGEDTRNGFTSHLYAALNRKGITTYNDDKKLRKGDVISDELLKAIEESMFAVIVFSSDYASSSWCLDELCKIIDCKNKLGLQMVVGFYDMEPCDVRHQIGTFREAFKKHEERYDTMKVQRWKEALKHVAEYSGWSSKNQYMGIGRHSKTTIARAVFETIRSRFEASCFVADVRQYFEKQDITDLQNQLLKQMNIISSDAYYNKYDGSKIIQTSFRRKKVLIVFDDVSHENQLENLAKEKDWFGAGSRIIITTRNKEVLKQQEGHETYEVKVLVERECFELFCSEAFNQAEPLERFLDLSKEVVNYCSGLPLALKATWMQDVIASCPYIEMRHSFTLAVAGLTQPHMIPKTSLRRGHVWGTPPPLSGLGTGYTTPGGEKNGVTKILKECGYDAEIGIDILINRSLLTLELDWKRDTLIGMHDLVEEMGKQIVIQESADGASKRSRLWCYEDIDSVLAQRQDIEATQSMALRMDQKYTGENWRDSDIRGSCFSKLQLLILDGVTARILCNIPSTLKVLRWKKCPMETLPLITDQRYELVEIDLRESQIVQLWEGKKFLNKLEHLNLSSCHKLKETPDLSGAPNLKTLTIRYCVELNYIHPSLTHHKSLVKLNLGECYRLETAGDKLEMSSLKKLTLLECSSFWELPEFGECMKQLLILTLTLGIGKPPSTFGNLVGLTELELYVKYIGSPISLGCLLSLKKLSLNFLFDLYDYRSEIQNIDVLLRSVSLLTALSSLKLFQCFLESEESTPYYDLGQLPFLTKLDLSWNLFKKVLPDLPSSLRLLQAIGCYSLDASNVNDVISKACCVFAESASQDGEDVFEMVIPGTGREIPAWFEHQEQGNGVSLSCPSTKTMALSLCFAFDNPFYGTKSFVICCNGKEFINKSLLKVFPCMHSGFMAIVFLNGYYVSNLLGQHDLFHILFPNYADKNNVGRSAARWVCNQDIQVPNFKKRKATLQLSKQDIMPLHEEEEGCASHQSSDNN 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121107g00005 1006 Gene3D - 297 343 IPR042197 -
Stsc121107g00005 1006 Pfam NB-ARC domain 168 341 IPR002182 GO:0043531
Stsc121107g00005 1006 Pfam TIR domain 20 163 IPR000157 GO:0007165
Stsc121107g00005 1006 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 190 - -
Stsc121107g00005 1006 Gene3D - 1 155 IPR035897 -
Stsc121107g00005 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 341 IPR027417 -
Stsc121107g00005 1006 SMART till_3 19 157 IPR000157 GO:0007165
Stsc121107g00005 1006 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 160 IPR035897 -
Stsc121107g00005 1006 PRINTS Disease resistance protein signature 239 253 - -
Stsc121107g00005 1006 PRINTS Disease resistance protein signature 332 346 - -
Stsc121107g00005 1006 PRINTS Disease resistance protein signature 580 596 - -
Stsc121107g00005 1006 Gene3D Ribonuclease Inhibitor 687 883 IPR032675 -
Stsc121107g00005 1006 SUPERFAMILY L domain-like 445 811 - -
Stsc121107g00005 1006 Gene3D - 166 293 IPR027417 -
Stsc121107g00005 1006 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Stsc121107g00005 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 760 IPR044974 GO:0006952
Stsc121107g00005 1006 Gene3D Ribonuclease Inhibitor 506 686 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121107g00005 Stsc-Chr121107 27129 36918 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121107g00005 167 774 WRKY Transcription Factor Family AT4G12020 26.935 5.41e-41 162