Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121106g00009 ATGGCGTCTCTTCACACCACCACCACTTCCTCACTCCCGTCAATCCAACCCCCAAGAGCCCTCCTCACCCACCACAAACCCATCCTCAACCTCTCCCTCTCCACCACCACCTTCCCCTCCCTCTCCCTCAAACTCACCCGCCCCCGCCGCGCCGCCGGAGCCCTCGGCGCCCGCATGGTCTCCACCGCCGCCGCAAGCTACGCTCTCGCCCTCGCCGACGTCGCCAAATCCAACAACACACTCGACGCCACCACCACCGACGTCGAGAAAATCGACGAGCTCTTCTCCGATCCACAGGTGTTCGACTTCTTCGCAAACCCTACCGTGGAGGCCGAACGGAAGAAGAAGCTCATCGACGAAATCGCCACGTCATCAAGCCTCCAAGCCCACACGCGGAACTTCCTGAACATTCTGGTGGATGCGAAGCGCATCGGTCTGGTGAAGGAGATTGCGAAGGAGTACGAGTTCGTGTATAACACGATCACGGATACCGAGTTAGCGGTGGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCACAGATCGCGAAGCAGGTGCAGAAGCTAACGGGGGCTAAGAACGTTAGGATCAAGACGGTTATTGACCCGAGCCTTGTGGCTGGGTTTACCGTTAGGTATGGAAATTCTGGATCCAAGTTGATTGATATGAGCGTCAAGAAGCAGCTTGAGGAGATTGCTGCTCAGCTTGATTTGGGTGACATCAAACTCAATGTATGA 741 0.5695 MASLHTTTTSSLPSIQPPRALLTHHKPILNLSLSTTTFPSLSLKLTRPRRAAGALGARMVSTAAASYALALADVAKSNNTLDATTTDVEKIDELFSDPQVFDFFANPTVEAERKKKLIDEIATSSSLQAHTRNFLNILVDAKRIGLVKEIAKEYEFVYNTITDTELAVVSSVVKLESQHLAQIAKQVQKLTGAKNVRIKTVIDPSLVAGFTVRYGNSGSKLIDMSVKKQLEEIAAQLDLGDIKLNV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121106g00009 246 Gene3D - 63 155 IPR026015 -
Stsc121106g00009 246 PRINTS ATP synthase delta subunit signature 143 157 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 PRINTS ATP synthase delta subunit signature 132 143 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 PRINTS ATP synthase delta subunit signature 194 209 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 PRINTS ATP synthase delta subunit signature 63 82 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 PRINTS ATP synthase delta subunit signature 212 230 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 59 161 IPR026015 -
Stsc121106g00009 246 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 196 215 IPR020781 GO:0015986|GO:0016020|GO:0046933
Stsc121106g00009 246 PANTHER ATP SYNTHASE DELTA CHAIN 49 238 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 Pfam ATP synthase delta (OSCP) subunit 64 237 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 Hamap ATP synthase subunit delta [atpD]. 59 239 IPR000711 GO:0015986|GO:0046933
Stsc121106g00009 246 NCBIfam ATP synthase F1 subunit delta 64 237 IPR000711 GO:0015986|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121106g00009 Stsc-Chr121106 34602 35342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121106g00009 1 244 Primary Pumps ATPases AT4G09650 61.633 3.55e-101 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121106g00009 K02113 - qsa:O6P43_030724 320.857