Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121106g00008 ATGCCTACCCGCTGTGGTTGTTTCCGAAGGGGCTTTTGGCCAATGATGCTATTTCCCTATGTGTTCCTCATTATGGCCATTATACTTATATGCATGGGAGGTGGAGCTAAACGTGGTGATTCCAATATTTTTCAATTCGCCACTACTGGTCTCGGTATCTTTATGCTTTTGGTTTTCTTGTTGCTGTTCATTAAATCTGACAGGCTTTCGCGTATATATTTGAGAGAAAACTCAGAAGAGAATAATACTATTGAGATCACAAGAAATATTAGAGTGGTTCCTTGGTTGGATAACGATGATAATCTCATGATAACGCTTCAAATAGATAGCCAAGGGACACAAGAACAGTCAACAGAGTCGCCTTTTAGCCGAAGTAAGCGGATTGCTAGGCTCGCTTTGAAGGCATTGCCGCAGGCTAAGATGTTCAAGGAGGAGGAAGAGGACGCCAACGGATTAGCTGGCCAGAGAGTTGATTGTTGTTCTATTTGCTTCGAAGAGTTCAAGAACGGGGAGTTGATTCAACCTTTTGGAGCATGTGTTCATGAGTTCCATTCGAATTGCATAAATTCTTGGTTGCACTGTGGCAAAATCAGTTGTCCACTATGTCGTGCAAATTTAGCTACATTTGTTGATTGA 636 0.4198 MPTRCGCFRRGFWPMMLFPYVFLIMAIILICMGGGAKRGDSNIFQFATTGLGIFMLLVFLLLFIKSDRLSRIYLRENSEENNTIEITRNIRVVPWLDNDDNLMITLQIDSQGTQEQSTESPFSRSKRIARLALKALPQAKMFKEEEEDANGLAGQRVDCCSICFEEFKNGELIQPFGACVHEFHSNCINSWLHCGKISCPLCRANLATFVD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121106g00008 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 208 IPR013083 -
Stsc121106g00008 211 SUPERFAMILY RING/U-box 137 208 - -
Stsc121106g00008 211 ProSiteProfiles Zinc finger RING-type profile. 160 203 IPR001841 -
Stsc121106g00008 211 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 47 206 IPR044675 -
Stsc121106g00008 211 Pfam Zinc finger, C3HC4 type (RING finger) 160 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121106g00008 Stsc-Chr121106 33179 33814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121106g00008 121 205 C3H Transcription Factor Family AT2G27940 32.941 4.36e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121106g00008 - - ahf:112718325 241.891